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[193460_at] Zinc finger present in dystrophin, CBP/p300

Description Y32B12A.1 /REP_DB=WormBase Gene ID /WP=CE19058 /TR=Q9XXG8 /GB=CAA19481.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger present in dystrophin, CBP-p300
Cluster 6grp_total > 52      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 16.2
(-3)
A 		115.2
(3)
A 		83.7
(1.1)
M 		96.4
(1.9)
A 		99
B 58.8
(-3)
A 		99.8
(3)
P 		74.9
(-0.6)
A 		60.2
(-2.8)
A 		41
C 51
(-2)
A 		104.3
(3)
A 		40.5
(-3)
A 		74.8
(0.2)
A 		64
avr 42
(-3) 		106.4
(3) 		66.4
(-0.7) 		77.1
(0.3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 80.9
(3)
A 		61.5
(0.7)
A 		66.7
(1.3)
P 		29.5
(-3)
A 		59.7
(0.5)
P 		72.6
(2)
A 		51
B 41.3
(-1)
A 		31
(-2.8)
A 		62.2
(2.6)
A 		50.4
(0.5)
A 		64.7
(3)
A 		29.9
(-3)
A 		35
C 34
(-2.9)
A 		69
(3)
A 		66.5
(2.6)
A 		68.9
(3)
A 		54.8
(0.6)
A 		33.4
(-3)
A 		36
avr 52.1
(-0.9) 		53.8
(-0.4) 		65.1
(3) 		49.6
(-1.7) 		59.7
(1.4) 		45.3
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.9
(-3)
A 		25
(3)
A 		21.9
(2)
M 		14.1
(-0.4)
A 		19
B 18.8
(0)
A 		24.7
(3)
P 		17.3
(-0.7)
A 		12.8
(-3)
A 		12
C 16.9
(-1.5)
A 		30
(3)
A 		14.1
(-2.5)
A 		12.6
(-3)
A 		17
avr 13.9
(-2.7) 		26.6
(3) 		17.8
(-0.9) 		13.2
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14.9
(0.1)
A 		21.9
(3)
A 		14.5
(-0.1)
P 		7.5
(-3)
A 		18
(1.4)
P 		17.7
(1.3)
A 		14
B 14.4
(-1.5)
A 		10.3
(-3)
A 		15.1
(-1.2)
A 		13.4
(-1.8)
A 		26.3
(3)
A 		11.1
(-2.7)
A 		16
C 12.6
(-2.2)
A 		21.1
(3)
A 		16.9
(0.5)
A 		13.9
(-1.4)
A 		17.7
(0.9)
A 		11.2
(-3)
A 		10
avr 14
(-1.4) 		17.8
(1.1) 		15.5
(-0.4) 		11.6
(-3) 		20.7
(3) 		13.3
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14709
Sequence Type Exemplar sequence
Representative Public ID Y32B12A.1 NCBI
Target Description Y32B12A.1 /REP_DB=WormBase Gene ID /WP=CE19058 /TR=Q9XXG8 /GB=CAA19481.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger present in dystrophin, CBP-p300
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074772 NCBI Caenorhabditis elegans Y32B12A.1 (Y32B12A.1) mRNA, complete cds. 11/11 None
SNAP00000002058 ENSEMBL cdna:SNAP chromosome:CEL140:V:16491094:16491686:1 11/11 None
GENEFINDER00000002061 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16491094:16491686:1 11/11 None
Y32B12A.1 ENSEMBL cdna:known chromosome:CEL140:V:16491094:16491686:1 gene:Y32B12A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16491093-16491686(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger present in dystrophin, CBP/p300
Ensembl Y32B12A.1
Entrez Gene 189561 Entrez gene
SwissProt Q9XXG8 EMBL-EBI
WormBase CE19058 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19481 Hypothetical protein Y32B12A.1 [Caenorhabditis elegans] ref|NP_507173.1| Y32B12A.1 [Caenorhabditis elegans] 1.0E-103
blast CAB04847 Hypothetical protein T26H2.5 [Caenorhabditis elegans] ref|NP_507738.1| T26H2.5 [Caenorhabditis elegans] 7.0E-31
blast AAC26954 Vegf (vascular endothelial growth factor) receptor family protein 2 [Caenorhabditis elegans] ref|NP_497158.2| VEGF (vascular endothelial growth factor) Receptor family member (ver-2) [Caenorhabditis elegans] 2.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 4.4E-9
Sequence
Target Sequence 
>C. ELEGANS:193460_AT
gaccacactccgttgaagaactcaagtatgtgccagccgagtaccatgaccacgttgtta
cctcgactatccatcaatctgaaatgcattctgggtatcaccgagatgtctacgtgactt
tcaacttatccacctgcaataagatcatcagaatggatttgcaccaggacgaggcattcg
atcagcttcacagaaaagcacgtgaaatgatttctgcctctcagttcaaaatgtttgatg
gcagccacgctcacgcaactccagagatcactaactcgtctcaagtgatgtctcttgtca
agatcagcccaatctaccgattcccatacctcatcatcaatctcgagccatgccactctc
acattcatcccactcatccaattgtccgttgtgactcttgctacactacaattactggac
accgcttcaaatgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACACTCCGTTGAAGAACTCAA 152 385 26 Antisense
CAAGTATGTGCCAGCCGAGTACCAT 294 183 48 Antisense
GAGTACCATGACCACGTTGTTACCT 522 399 64 Antisense
TTACCTCGACTATCCATCAATCTGA 233 683 83 Antisense
CGTGACTTTCAACTTATCCACCTGC 612 243 138 Antisense
GGACGAGGCATTCGATCAGCTTCAC 440 521 192 Antisense
ATGTTTGATGGCAGCCACGCTCACG 77 49 256 Antisense
TCATCATCAATCTCGAGCCATGCCA 332 621 356 Antisense
CACTCATCCAATTGTCCGTTGTGAC 497 197 396 Antisense
TCCGTTGTGACTCTTGCTACACTAC 89 595 410 Antisense
TACTGGACACCGCTTCAAATGCACC 442 645 438 Antisense
Sequence Source Affymetrix Proprietary Database