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[193457_s_at] serine/threonine specific protein phosphatase

Description F52H3.6 /REP_DB=WormBase Gene ID /WP=CE03402 /TR=Q27501 /GB=CAA91326.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine specific protein phosphatase
Cluster 6grp_total > 78      4grp_total > 38      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 22.5
(1.5)
A 		28.6
(3)
A 		6
(-2.5)
A 		4.1
(-3)
A 		25
B 37.9
(3)
A 		5.8
(-2.9)
A 		11.8
(-1.8)
A 		5.5
(-3)
A 		32
C 21.9
(1.6)
A 		13.5
(-0.5)
A 		3.6
(-3)
A 		27.5
(3)
A 		24
avr 27.4
(3) 		16
(-0.4) 		7.1
(-3) 		12.4
(-1.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 8.4
(-2.9)
A 		29.7
(-1.6)
A 		11.4
(-2.7)
A 		6
(-3)
A 		82.5
(1.5)
A 		107.8
(3)
P 		102
B 32
(-1.9)
A 		23.2
(-2.3)
A 		14.6
(-2.6)
A 		6.4
(-3)
A 		48.4
(-1.1)
A 		142.6
(3)
P 		136
C 43.5
(-1.4)
A 		38.7
(-1.8)
A 		20.3
(-3)
A 		26.5
(-2.6)
A 		48.5
(-1.1)
P 		109.7
(3)
P 		89
avr 28
(-2.2) 		30.5
(-2) 		15.4
(-2.9) 		13
(-3) 		59.8
(-0.4) 		120
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.2
(3)
A 		6.2
(1.4)
A 		1.6
(-2.2)
A 		0.6
(-3)
A 		8
B 12.1
(3)
A 		1.4
(-2.9)
A 		2.7
(-2.2)
A 		1.2
(-3)
A 		11
C 7.2
(3)
A 		3.9
(-0.4)
A 		1.3
(-3)
A 		4.6
(0.4)
A 		6
avr 9.2
(3) 		3.8
(-1.4) 		1.9
(-3) 		2.1
(-2.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 1.6
(-3)
A 		10.6
(-0.8)
A 		2.5
(-2.8)
A 		1.5
(-3)
A 		24.9
(2.7)
A 		26.3
(3)
P 		25
B 11.1
(-1.9)
A 		7.7
(-2.3)
A 		3.5
(-2.8)
A 		1.7
(-3)
A 		19.7
(-0.9)
A 		53.2
(3)
P 		52
C 16.1
(-0.9)
A 		11.8
(-1.7)
A 		5.2
(-3)
A 		5.3
(-3)
A 		15.7
(-1)
P 		36.7
(3)
P 		32
avr 9.6
(-1.9) 		10
(-1.8) 		3.7
(-2.8) 		2.8
(-3) 		20.1
(-0.1) 		38.7
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193457_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3823
Sequence Type Exemplar sequence
Representative Public ID F52H3.6 NCBI
Target Description F52H3.6 /REP_DB=WormBase Gene ID /WP=CE03402 /TR=Q27501 /GB=CAA91326.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine specific protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063766 NCBI Caenorhabditis elegans F52H3.6 (F52H3.6) mRNA, complete cds. 11/11 A 
SNAP00000021623 ENSEMBL cdna:SNAP chromosome:CEL140:II:10026561:10027774:-1 11/11 None
GENEFINDER00000021635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10026561:10027774:-1 11/11 None
F52H3.6 ENSEMBL cdna:known chromosome:CEL140:II:10026561:10027774:-1 gene:F52H3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10026557-10027771(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine specific protein phosphatase
Ensembl F52H3.6
Entrez Gene 174561 Entrez gene
SwissProt Q27501 EMBL-EBI
WormBase CE03402 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91326 Hypothetical protein F52H3.6 [Caenorhabditis elegans] ref|NP_496167.1| F52H3.6 [Caenorhabditis elegans] 0.0
blast CAA90149 Hypothetical protein ZK938.1 [Caenorhabditis elegans] emb|CAB09135.1| Hypothetical protein ZK938.1 [Caenorhabditis elegans] ref|NP_496117.1| ZK938.1 [Caenorhabditis elegans] 1.0E-170
blast CAE57964 Hypothetical protein CBG01025 [Caenorhabditis briggsae] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.2E-41
Sequence
Target Sequence 
>C. ELEGANS:193457_S_AT
catctcccattgtgcgcgatgatctccggacgaatcttctgcatgcatggtggattgagc
cagaaattggtttcctggacacagcttgccgaaatcacgcgtccattcgatccaccaaac
aattcccttgcaatggatctcctttgggcagatccagagaacaacatgaccggatgggcg
gagagctcgcgcggagtttcgcagatttttggagccgacgtagtaaaggacttcacggag
aagatgaatatcgatctcattgctagaggacatcaggttgttcaagatggatacgaattt
ttcgccgacaaacgcctcgtgacaatcttttctgcacccaaatactgtggagaattcgac
aacaatgcagcagttatgattgtcgacgagcggctcatcgtttccttcgagatcctgaag
ccagccataagagaagtgaaaattcaagctcgcggagcagcagccgccaagaacatgtca
accagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTCCCATTGTGCGCGATGATCT 548 211 472 Antisense
AGAAATTGGTTTCCTGGACACAGCT 192 69 533 Antisense
TGGACACAGCTTGCCGAAATCACGC 107 549 547 Antisense
CCACCAAACAATTCCCTTGCAATGG 368 273 583 Antisense
GAGAACAACATGACCGGATGGGCGG 193 389 628 Antisense
CTCGCGCGGAGTTTCGCAGATTTTT 424 233 657 Antisense
CGCAGATTTTTGGAGCCGACGTAGT 513 253 671 Antisense
GAGCCGACGTAGTAAAGGACTTCAC 114 385 683 Antisense
AATGCAGCAGTTATGATTGTCGACG 480 165 835 Antisense
TTGTCGACGAGCGGCTCATCGTTTC 564 705 851 Antisense
GCCGCCAAGAACATGTCAACCAGAA 573 285 934 Antisense
Sequence Source Affymetrix Proprietary Database