[Home] | [Total List]

[193455_at] 7 transmembrane receptor (rhodopsin family)

Description Y57A10C.7 /REP_DB=WormBase Gene ID /WP=CE18419 /TR=O62491 /GB=CAA19549.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 4grp_high_8_8 > 28      6grp_total > 55      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 47.9
(-3)
P 		54.8
(-2.1)
A 		52.8
(-2.4)
A 		96.1
(3)
P 		48
B 70.2
(0.7)
P 		72.5
(1)
P 		38.7
(-3)
A 		90
(3)
P 		51
C 48.5
(-1.3)
P 		90.9
(3)
P 		32
(-3)
P 		76.2
(1.5)
P 		59
avr 55.5
(-1.1) 		72.7
(1.1) 		41.2
(-3) 		87.4
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 12
(-3)
A 		26
(-1.1)
A 		55.5
(3)
P 		31.4
(-0.3)
A 		32
(-0.2)
A 		53.3
(2.7)
P 		44
B 41.9
(0.9)
A 		48.9
(2.3)
P 		44.7
(1.5)
P 		52.9
(3)
P 		20.9
(-3)
A 		26.7
(-1.9)
A 		32
C 36.1
(1.1)
A 		50
(3)
A 		19
(-1.2)
A 		5.6
(-3)
A 		7.9
(-2.7)
A 		37.6
(1.3)
A 		44
avr 30
(-0.3) 		41.6
(3) 		39.7
(2.5) 		30
(-0.3) 		20.3
(-3) 		39.2
(2.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.5
(3)
P 		11.9
(-3)
A 		13.8
(-1)
A 		14.1
(-0.6)
P 		6
B 22.4
(3)
P 		17.9
(1)
P 		9
(-3)
A 		19.2
(1.6)
P 		13
C 16.1
(-1)
P 		26.1
(3)
P 		11.1
(-3)
P 		12.8
(-2.3)
P 		15
avr 18.7
(3) 		18.6
(2.9) 		11.3
(-3) 		15.4
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.2
(-3)
A 		9.2
(0.9)
A 		12.1
(2.5)
P 		8
(0.2)
A 		9.6
(1.1)
A 		13
(3)
P 		11
B 14.6
(1.7)
A 		16.3
(3)
P 		10.9
(-1.2)
P 		14
(1.2)
P 		8.5
(-3)
A 		10
(-1.8)
A 		8
C 13.4
(2.2)
A 		15.2
(3)
A 		4.8
(-1.4)
A 		1.1
(-3)
A 		2.6
(-2.4)
A 		12.6
(1.9)
A 		14
avr 10.1
(-0.1) 		13.6
(3) 		9.3
(-0.9) 		7.7
(-2.3) 		6.9
(-3) 		11.9
(1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3775
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.7 NCBI
Target Description Y57A10C.7 /REP_DB=WormBase Gene ID /WP=CE18419 /TR=O62491 /GB=CAA19549.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064240(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064240 NCBI Caenorhabditis elegans Y57A10C.7 (Y57A10C.7) mRNA, complete cds. 10/11 None
GENEFINDER00000005463 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12430691:12432187:-1 11/11 None
Y57A10C.7 ENSEMBL cdna:known chromosome:CEL140:II:12430691:12432214:-1 gene:Y57A10C.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12430687-12432211(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl Y57A10C.7
Entrez Gene 190351 Entrez gene
SwissProt O62491 EMBL-EBI
WormBase CE35690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19549 Hypothetical protein Y57A10C.7 [Caenorhabditis elegans] ref|NP_496641.2| Y57A10C.7 [Caenorhabditis elegans] 1.0E-176
blast CAA19549 Hypothetical protein Y57A10C.7 [Caenorhabditis elegans] ref|NP_496641.2| Y57A10C.7 [Caenorhabditis elegans] 1.0E-169
blast CAA19550 Hypothetical protein Y57A10C.8 [Caenorhabditis elegans] ref|NP_496640.1| Y57A10C.8 [Caenorhabditis elegans] 1.0E-107
blast CAE73508 Hypothetical protein CBG20966 [Caenorhabditis briggsae] 7.0E-59
blast CAA19551 Hypothetical protein Y57A10C.9 [Caenorhabditis elegans] ref|NP_496642.1| Y57A10C.9 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496641.2 7 10-32,52-74,89-111,132-154,179-201,221-243,258-280
Y57A10C.7 7 10-32,52-74,89-111,132-154,179-201,221-243,258-280
GENEFINDER00000005463 7 5-27,43-65,80-102,123-145,170-192,219-236,251-273
Sequence
Target Sequence 
>C. ELEGANS:193455_AT
cgtggttagttgttcgatggcgctggatcgatgtttggcaattttctcgccggttttgta
tcgccaactcagtaaaacctactttgcaaattgctcaatggccggtgggctctgttggtt
tttattggactttttggttcaattgcttacagctccatatcaaaaagttccaaattgcgc
tacaatggcgtgttttgtgaataagcattttttgatgtatgtcagttactccaatacggc
tgccggaatcttcatagtcctcatgagcatttgtgttttcgcggggatccgaaaaatttc
aactggcgttgcggtaaatacagcctccaaaaccagcaatctattccagcaagccaaccg
aatgactgccggaattctattttgctctttattctttctaatagttccgtcatttctgat
gaccgggtatgaggaaattacgggtgttaaccttttctcggaagttggacctttttatat
ttgtgcgattttgatcaatggtttctctgacggtctagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGTTAGTTGTTCGATGGCGCTG 227 245 327 Antisense
ATGGCGCTGGATCGATGTTTGGCAA 566 53 343 Antisense
CAATTTTCTCGCCGGTTTTGTATCG 630 179 365 Antisense
GTGGGCTCTGTTGGTTTTTATTGGA 153 489 431 Antisense
GTTACTCCAATACGGCTGCCGGAAT 49 447 551 Antisense
CTGCCGGAATCTTCATAGTCCTCAT 246 237 566 Antisense
GCGTTGCGGTAAATACAGCCTCCAA 695 289 632 Antisense
CAGCAATCTATTCCAGCAAGCCAAC 558 203 660 Antisense
GCAAGCCAACCGAATGACTGCCGGA 524 317 675 Antisense
GACTGCCGGAATTCTATTTTGCTCT 409 375 690 Antisense
CAATGGTTTCTCTGACGGTCTAGTA 626 181 822 Antisense
Sequence Source Affymetrix Proprietary Database