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[193453_at] 7 transmembrane receptor (rhodopsin family)

Description Y57A10C.8 /REP_DB=WormBase Gene ID /WP=CE18420 /TR=O62492 /GB=CAA19550.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 28      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 21.1
(-2.1)
A 		7.5
(-3)
A 		19.8
(-2.2)
A 		95.8
(3)
P 		88
B 45.6
(3)
A 		3.9
(-3)
A 		14
(-1.5)
A 		37.6
(1.8)
A 		42
C 41.3
(-1.1)
A 		35.8
(-1.6)
A 		17.7
(-3)
A 		93.7
(3)
P 		76
avr 36
(-1) 		15.7
(-3) 		17.2
(-2.9) 		75.7
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 80.5
(3)
A 		18.1
(-2.1)
A 		42.2
(-0.2)
A 		7.7
(-3)
A 		17
(-2.2)
A 		39.9
(-0.3)
A 		73
B 40.9
(3)
A 		21
(-0.3)
A 		4.7
(-3)
A 		35.1
(2)
A 		9.6
(-2.2)
A 		35
(2)
A 		36
C 51.3
(3)
M 		51.2
(3)
A 		8.9
(-2.2)
A 		2
(-3)
A 		45.8
(2.3)
A 		32.7
(0.7)
A 		49
avr 57.6
(3) 		30.1
(-0.9) 		18.6
(-2.5) 		14.9
(-3) 		24.1
(-1.7) 		35.9
(-0) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.7
(-0)
A 		1.6
(-3)
A 		5.2
(-1.3)
A 		14
(3)
P 		12
B 14.5
(3)
A 		1
(-3)
A 		3.3
(-2)
A 		8
(0.1)
A 		14
C 13.7
(1.7)
A 		10.3
(-0.4)
A 		6.2
(-3)
A 		15.8
(3)
P 		10
avr 12
(2.6) 		4.3
(-3) 		4.9
(-2.6) 		12.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14.8
(3)
A 		6.4
(-0.9)
A 		9.2
(0.4)
A 		2
(-3)
A 		5.1
(-1.5)
A 		9.7
(0.6)
A 		13
B 14.2
(3)
A 		7
(-0.3)
A 		1.1
(-3)
A 		9.3
(0.8)
A 		3.9
(-1.7)
A 		13
(2.5)
A 		13
C 19
(3)
M 		15.6
(1.9)
A 		2.3
(-2.4)
A 		0.4
(-3)
A 		14.8
(1.6)
A 		11
(0.4)
A 		19
avr 16
(3) 		9.7
(-0.1) 		4.2
(-2.9) 		3.9
(-3) 		7.9
(-1) 		11.2
(0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3640
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.8 NCBI
Target Description Y57A10C.8 /REP_DB=WormBase Gene ID /WP=CE18420 /TR=O62492 /GB=CAA19550.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064239 NCBI Caenorhabditis elegans Y57A10C.8 (Y57A10C.8) mRNA, complete cds. 11/11 None
GENEFINDER00000005459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12427889:12429849:-1 11/11 None
Y57A10C.8 ENSEMBL cdna:known chromosome:CEL140:II:12427889:12429849:-1 gene:Y57A10C.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12427885-12429846(-) 98.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl Y57A10C.8
Entrez Gene 190352 Entrez gene
SwissProt O62492 EMBL-EBI
WormBase CE18420 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19550 Hypothetical protein Y57A10C.8 [Caenorhabditis elegans] ref|NP_496640.1| Y57A10C.8 [Caenorhabditis elegans] 0.0
blast CAA19549 Hypothetical protein Y57A10C.7 [Caenorhabditis elegans] ref|NP_496641.2| Y57A10C.7 [Caenorhabditis elegans] 1.0E-99
blast CAE73508 Hypothetical protein CBG20966 [Caenorhabditis briggsae] 2.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496640.1 7 33-55,72-94,109-131,152-174,198-220,243-265,280-302
Y57A10C.8 7 33-55,72-94,109-131,152-174,198-220,243-265,280-302
GENEFINDER00000005459 7 33-55,72-94,109-131,152-174,198-220,243-265,280-302
Sequence
Target Sequence 
>C. ELEGANS:193453_AT
atgctatggcactaggcttcatctggtttctcttcgattttttatttcaaatcttttcgt
ctgaatatcagcgagttccaaattgcgctacaatggcttgttttgtcaataaaatatttt
taaaatatctatcctattccaatacgctcagcagtttcttcgtagctattatgagtgttt
tggtgtttgtggggattcggaagttttccaagaaaagagttggcacatttaccacccgaa
agacttctacagtattccggaaagctaaccgaattacggcaggaattttgtttggctctc
tattttttgtggtattcccctcgtttttggtgatgggctttgaggaagtaactgggaaat
cgttgtttatatcattgggccctttttatattttttcgatagttgtaaatggattcgccg
atggtctggtatttgtaattgttaatcggaagcacatagggtctgacaaaaatctagtag
attctacagtaggtcccaagaatacagtaatacctgtacttcaccaacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTATGGCACTAGGCTTCATCTG 635 41 476 Antisense
TCATCTGGTTTCTCTTCGATTTTTT 294 621 494 Antisense
TCTATCCTATTCCAATACGCTCAGC 303 615 603 Antisense
ACGCTCAGCAGTTTCTTCGTAGCTA 59 93 619 Antisense
AAGAGTTGGCACATTTACCACCCGA 368 153 690 Antisense
GCAGGAATTTTGTTTGGCTCTCTAT 545 309 754 Antisense
GGCTCTCTATTTTTTGTGGTATTCC 592 539 769 Antisense
TATTCCCCTCGTTTTTGGTGATGGG 420 663 788 Antisense
GTTGTTTATATCATTGGGCCCTTTT 580 437 837 Antisense
GGATTCGCCGATGGTCTGGTATTTG 123 509 886 Antisense
GTAATACCTGTACTTCACCAACACG 133 463 982 Antisense
Sequence Source Affymetrix Proprietary Database