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[193451_at]

Description F47G3.2 /REP_DB=WormBase Gene ID /WP=CE04607 /TR=Q9GYN7 /GB=AAF99950.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=E. coli arsenical pump-driving ATPase (ARSA)
Cluster 6grp_total > 40      4grp_total > 39      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 112.1
(3)
P 		83.1
(-3)
A 		98.3
(0.1)
P 		111.5
(2.9)
A 		29
B 98.6
(1.6)
P 		115.4
(3)
A 		86.1
(0.6)
A 		42.9
(-3)
A 		73
C 135.6
(3)
P 		85.3
(-3)
A 		90.8
(-2.3)
A 		134.1
(2.8)
P 		50
avr 115.4
(3) 		94.6
(-2.3) 		91.7
(-3) 		96.2
(-1.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 89
(0.1)
A 		64.9
(-3)
A 		94.5
(0.8)
P 		111.3
(3)
P 		68.6
(-2.5)
A 		100.4
(1.6)
P 		46
B 55.2
(-3)
A 		82.7
(0.7)
A 		99.5
(3)
A 		65
(-1.7)
A 		55.9
(-2.9)
P 		66.2
(-1.5)
P 		44
C 77.6
(-1.7)
A 		98.9
(3)
A 		85.4
(0)
A 		94.9
(2.1)
P 		77.5
(-1.8)
A 		71.9
(-3)
M 		27
avr 73.9
(-1.5) 		82.2
(0.5) 		93.1
(3) 		90.4
(2.4) 		67.3
(-3) 		79.5
(-0.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 40.8
(3)
P 		18
(-2.6)
A 		25.7
(-0.7)
P 		16.3
(-3)
A 		25
B 31.4
(3)
P 		28.5
(2.2)
A 		20
(-0.1)
A 		9.1
(-3)
A 		22
C 44.9
(3)
P 		24.5
(-2.5)
A 		31.7
(-0.6)
A 		22.6
(-3)
P 		22
avr 39
(3) 		23.7
(-1) 		25.8
(-0.4) 		16
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 16.4
(-3)
A 		23.1
(0.4)
A 		20.6
(-0.9)
P 		28.2
(3)
P 		20.7
(-0.8)
A 		24.4
(1.1)
P 		12
B 19.2
(-1.8)
A 		27.5
(3)
A 		24.2
(1.1)
A 		17.2
(-3)
A 		22.7
(0.2)
P 		24.7
(1.4)
P 		10
C 28.8
(2.2)
A 		30.2
(3)
A 		21.7
(-1.6)
A 		19.1
(-3)
P 		25.1
(0.2)
A 		24.1
(-0.3)
M 		11
avr 21.5
(-3) 		26.9
(3) 		22.2
(-2.2) 		21.5
(-3) 		22.8
(-1.6) 		24.4
(0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18536
Sequence Type Exemplar sequence
Representative Public ID F47G3.2 NCBI
Target Description F47G3.2 /REP_DB=WormBase Gene ID /WP=CE04607 /TR=Q9GYN7 /GB=AAF99950.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=E. coli arsenical pump-driving ATPase (ARSA)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029514 NCBI Caenorhabditis elegans F47G3.2 (F47G3.2) mRNA, complete cds. 11/11 None
SNAP00000042198 ENSEMBL cdna:SNAP chromosome:CEL140:X:2383114:2384269:1 10/11 None
F47G3.2b ENSEMBL cdna:known chromosome:CEL140:X:2382685:2384269:1 gene:F47G3.2 11/11 None
F47G3.2a ENSEMBL cdna:known chromosome:CEL140:X:2382690:2384269:1 gene:F47G3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042203 5/11 Cross Hyb Matching Probes None
SNAP00000042197 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2382689-2384269(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G3.2
Entrez Gene 180542 Entrez gene
SwissProt Q8WQF2 EMBL-EBI
WormBase CE30136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29333 hypothetical protein F47G3.2 - Caenorhabditis elegans 1.0E-121
blast AAL65785 Hypothetical protein F47G3.2 [Caenorhabditis elegans] ref|NP_001024685.1| F47G3.2 [Caenorhabditis elegans] 5.0E-96
blast T29333 hypothetical protein F47G3.2 - Caenorhabditis elegans 9.0E-71
blast AAL65785 Hypothetical protein F47G3.2 [Caenorhabditis elegans] ref|NP_001024685.1| F47G3.2 [Caenorhabditis elegans] 1.0E-70
blast CAA77452 Hypothetical protein ZK637.5 [Caenorhabditis elegans] ref|NP_498965.1| ZK637.5 [Caenorhabditis elegans] sp|P30632|ARSA_CAEEL Putative arsenical pump-driving ATPase (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) 8.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003348 EMBL-EBI Anion-transporting ATPase 2.5E-35
Pfam IPR003348 EMBL-EBI Anion-transporting ATPase 1.1E-20
Pfam IPR003348 EMBL-EBI Anion-transporting ATPase 2.1E-10
Sequence
Target Sequence 
>C. ELEGANS:193451_AT
aaattcattcaaactccaacactggtcgaaggattcgaaaatcttttcgcgatggaaatt
gattcaaattcaaatggagaaggcgtagaaatgggaaatatcaaaaaaatgttccaaaat
gctgcacaaaacgaaggtggaagcggaatgttagaaccaatgttgaataacatcggtgga
atgtttgaaatggaagatgatgaaacgcttgagacgatgatgacagctgcagtgaaagat
ttggaaaggatgaacgcacagttcaaggatcttaactgcaccttattcgtctgcatctgt
atggccgattttcaagccgaacgacatattcaggagttgtccaaacaaggaaccgatact
cataatattattgtcaatcaacttctcattccggatatcgatgaaaatggagcagtttca
aggcgaaaatgtgcacaacaaaccggccaagcttcaacttctgatccaacccgaggtatg
ttctcgtgcaacttcagcagtatgcacttcaggacctcttcaacacttaaccgtcatctt
ctcaacattcatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCATTCAAACTCCAACACTGG 508 115 124 Antisense
TCTTAACTGCACCTTATTCGTCTGC 10 615 393 Antisense
ATTCGTCTGCATCTGTATGGCCGAT 614 9 408 Antisense
GTATGGCCGATTTTCAAGCCGAACG 494 453 422 Antisense
TCAACTTCTCATTCCGGATATCGAT 659 629 501 Antisense
CAACAAACCGGCCAAGCTTCAACTT 684 187 559 Antisense
ACTTCTGATCCAACCCGAGGTATGT 386 103 580 Antisense
GGTATGTTCTCGTGCAACTTCAGCA 148 505 598 Antisense
TCAGCAGTATGCACTTCAGGACCTC 158 621 617 Antisense
TCAGGACCTCTTCAACACTTAACCG 281 597 632 Antisense
CCGTCATCTTCTCAACATTCATATG 345 265 654 Antisense
Sequence Source Affymetrix Proprietary Database