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[193448_s_at] membrane protein; probably a channel protein

Description Y8G1A.2 /REP_DB=WormBase Gene ID /WP=CE18356 /TR=O44887 /GB=AAB95049.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=membrane protein; probably a channel protein
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 04      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 02      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2408
1 2 3 4 range
A 2517.2
(2.4)
P 		2723
(3)
P 		2108.6
(1.3)
P 		514.5
(-3)
P 		2209
B 2625.9
(3)
P 		2523.9
(2.7)
P 		2401.5
(2.4)
P 		463.1
(-3)
P 		2163
C 2309.6
(1.6)
P 		2871.2
(3)
P 		2322.2
(1.6)
P 		507.9
(-3)
P 		2363
avr 2484.2
(2.4) 		2706
(3) 		2277.4
(1.8) 		495.2
(-3) 		2211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2871
1 2 3 4 5 6 range
A 3600.6
(3)
P 		2458.1
(0.5)
P 		2241
(0.1)
P 		1356.4
(-1.8)
P 		1859.5
(-0.8)
P 		822
(-3)
P 		2779
B 3473.3
(3)
P 		2790.5
(1.5)
P 		2830.3
(1.6)
P 		2132.7
(0)
P 		1412.5
(-1.6)
P 		780.8
(-3)
P 		2693
C 3651.3
(3)
P 		2771.3
(1.1)
P 		2092.9
(-0.3)
P 		1719.1
(-1.1)
P 		1199.5
(-2.2)
P 		799.2
(-3)
P 		2852
avr 3575.1
(3) 		2673.3
(1) 		2388.1
(0.4) 		1736.1
(-1) 		1490.5
(-1.5) 		800.7
(-3) 		2774
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 841
1 2 3 4 range
A 916.5
(3)
P 		591.1
(0.7)
P 		551.2
(0.4)
P 		75.3
(-3)
P 		841
B 837.4
(3)
P 		623.3
(1.3)
P 		556.5
(0.7)
P 		98.7
(-3)
P 		739
C 764.5
(2.5)
P 		825.5
(3)
P 		809.4
(2.9)
P 		85.6
(-3)
P 		740
avr 839.5
(3) 		680
(1.7) 		639
(1.4) 		86.5
(-3) 		753

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1153
1 2 3 4 5 6 range
A 663.7
(1.1)
P 		874.2
(3)
P 		488
(-0.4)
P 		344
(-1.7)
P 		561.1
(0.2)
P 		200.1
(-3)
P 		674
B 1208.5
(3)
P 		928.8
(1.2)
P 		687.3
(-0.4)
P 		564.9
(-1.2)
P 		573.9
(-1.2)
P 		291.2
(-3)
P 		917
C 1353.4
(3)
P 		845.6
(0.2)
P 		532.7
(-1.5)
P 		345.7
(-2.6)
P 		388.1
(-2.3)
P 		267.5
(-3)
P 		1086
avr 1075.2
(3) 		882.9
(1.6) 		569.3
(-0.7) 		418.2
(-1.8) 		507.7
(-1.1) 		252.9
(-3) 		822
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193448_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.56
Sequence Type Exemplar sequence
Representative Public ID Y8G1A.2 NCBI
Target Description Y8G1A.2 /REP_DB=WormBase Gene ID /WP=CE18356 /TR=O44887 /GB=AAB95049.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=membrane protein; probably a channel protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058811 NCBI Caenorhabditis elegans INneXin family member (inx-13) (inx-13) mRNA, complete cds. 11/11 None
Y8G1A.2.2 ENSEMBL cdna:known chromosome:CEL140:I:3748537:3753962:-1 gene:Y8G1A.2 11/11 None
Y8G1A.2.1 ENSEMBL cdna:known chromosome:CEL140:I:3748537:3753960:-1 gene:Y8G1A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037496 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037502 4/11 Cross Hyb Matching Probes None
SNAP00000024871 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3748751-3753907(-) 100.0 100.0
Public Domain and Genome References
Gene Title membrane protein; probably a channel protein
Gene Symbol inx-13
Ensembl Y8G1A.2
Entrez Gene 171943 Entrez gene
SwissProt O44887 EMBL-EBI
WormBase CE18356 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95049 Innexin protein 13 [Caenorhabditis elegans] ref|NP_491212.1| INneXin family member (inx-13) [Caenorhabditis elegans] 0.0
blast CAE66658 Hypothetical protein CBG11995 [Caenorhabditis briggsae] 0.0
blast AAN71842 Innexin protein 1, isoform a [Caenorhabditis elegans] ref|NP_741826.1| INneXin family member (inx-1) [Caenorhabditis elegans] gb|AAB09671.1| transmembrane protein 2.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491212.1 5 23-41,100-122,174-196,203-225,270-292
Y8G1A.2.2 5 23-41,100-122,174-196,203-225,270-292
Y8G1A.2.1 5 23-41,100-122,174-196,203-225,270-292
Sequence
Target Sequence 
>C. ELEGANS:193448_S_AT
gtacctatttgtcaagttcctctacttagttcaaatcgtcttccaattcatcattctcaa
caacttcctcggcacttcctacaccttctggggtcttggaatcctctccgacattctgaa
tgggcgtgaatgggaggagagcggtcacttcccaagagtaaccatgtgcgatttcgaggt
gcgtgtgctcggcaacaagcatcgtcacaccgtccaatgtgtgctgatgatcaacatgtt
caatgagaaggtatacgtgttcctgtggttctggcttgtcattgtcggagtcgccacatt
cctgaaccttgtcaactggacccgcaagttgatgttccgttcggcacgcaaggctcacat
taagtcctatttacaaattgaggacaacttcagtgacgataactctcgaaatggacaaat
tctcgacaaattcgtcgactacaagctcaaatccgacggtgtcttcatcactcatttaat
cgataacaacggtggatccgtgttctctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCTATTTGTCAAGTTCCTCTAC 157 459 570 Antisense
GTTCAAATCGTCTTCCAATTCATCA 174 445 598 Antisense
TCCTACACCTTCTGGGGTCTTGGAA 193 591 646 Antisense
ATCCTCTCCGACATTCTGAATGGGC 478 39 670 Antisense
AGCGGTCACTTCCCAAGAGTAACCA 502 59 709 Antisense
GTGCGTGTGCTCGGCAACAAGCATC 289 479 748 Antisense
AGGTATACGTGTTCCTGTGGTTCTG 661 57 818 Antisense
GGACCCGCAAGTTGATGTTCCGTTC 137 519 887 Antisense
GGCACGCAAGGCTCACATTAAGTCC 62 537 912 Antisense
GCTCAAATCCGACGGTGTCTTCATC 340 301 1014 Antisense
ACAACGGTGGATCCGTGTTCTCTCA 234 113 1055 Antisense
Sequence Source Affymetrix Proprietary Database