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[193446_s_at] kinesin, kinesin-14 family

Description C41G7.2 /REP_DB=WormBase Gene ID /WP=CE08666 /TR=Q93366 /GB=CAB02839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila claret segregational protein like
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_total > 96      4grp_total > 10      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 167.9
(-3)
P 		169.4
(-3)
P 		176.5
(-2.8)
P 		448.1
(3)
P 		280
B 167.3
(-2.8)
P 		222.4
(-1.7)
P 		157.8
(-3)
P 		457.8
(3)
P 		300
C 210.2
(-2.4)
P 		233.1
(-1.9)
P 		180.3
(-3)
P 		463.3
(3)
P 		283
avr 181.8
(-2.8) 		208.3
(-2.2) 		171.5
(-3) 		456.4
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 102.3
(-3)
A 		208.6
(-1.7)
P 		212.4
(-1.7)
P 		370.3
(0.2)
P 		421.2
(0.8)
P 		603.4
(3)
P 		501
B 160.8
(-3)
P 		171.7
(-2.9)
P 		206.5
(-2.6)
P 		330.9
(-1.5)
P 		516.7
(0.2)
P 		829.1
(3)
P 		668
C 188.5
(-3)
P 		190.7
(-3)
P 		215.8
(-2.7)
P 		346
(-1.2)
P 		621.7
(1.9)
P 		719
(3)
P 		531
avr 150.5
(-3) 		190.3
(-2.6) 		211.6
(-2.4) 		349.1
(-0.9) 		519.9
(0.9) 		717.2
(3) 		567
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 61.1
(2.1)
P 		36.8
(-3)
P 		46.1
(-1.1)
P 		65.6
(3)
P 		29
B 53.3
(-1.4)
P 		54.9
(-1.2)
P 		36.6
(-3)
P 		97.6
(3)
P 		61
C 69.6
(-0.3)
P 		67
(-1.4)
P 		62.8
(-3)
P 		78.1
(3)
P 		15
avr 61.3
(-0.6) 		52.9
(-2.2) 		48.5
(-3) 		80.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 18.9
(-3)
A 		74.2
(-0.4)
P 		46.3
(-1.7)
P 		93.9
(0.5)
P 		127.1
(2.1)
P 		146.9
(3)
P 		128
B 56
(-2.9)
P 		57.2
(-2.8)
P 		50.2
(-3)
P 		87.6
(-2.1)
P 		209.9
(0.7)
P 		309.2
(3)
P 		259
C 69.9
(-2.5)
P 		58.2
(-2.9)
P 		54.9
(-3)
P 		69.6
(-2.5)
P 		201.2
(1.7)
P 		240.7
(3)
P 		186
avr 48.3
(-3) 		63.2
(-2.5) 		50.5
(-2.9) 		83.7
(-1.8) 		179.4
(1.3) 		232.3
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193446_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2476
Sequence Type Exemplar sequence
Representative Public ID C41G7.2 NCBI
Target Description C41G7.2 /REP_DB=WormBase Gene ID /WP=CE08666 /TR=Q93366 /GB=CAB02839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila claret segregational protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060126 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-16) (klp-16) mRNA, complete cds. 11/11 A 
SNAP00000008714 ENSEMBL cdna:SNAP chromosome:CEL140:I:9520649:9522637:1 11/11 None
GENEFINDER00000008731 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9520649:9522637:1 11/11 None
C41G7.2.1 ENSEMBL cdna:known chromosome:CEL140:I:9520575:9522922:1 gene:C41G7.2 11/11 None
C41G7.2.2 ENSEMBL cdna:known chromosome:CEL140:I:9520601:9522878:1 gene:C41G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9520579-9522568(+) 100.0 100.0
chrI:5577195-5579184(-) 93.88 93.88
Public Domain and Genome References
Gene Title kinesin, kinesin-14 family
Gene Symbol klp-16
Ensembl C41G7.2
Entrez Gene 172784 Entrez gene
SwissProt Q93366 EMBL-EBI
WormBase CE08666 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
3774 motor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02839 Hypothetical protein C41G7.2 [Caenorhabditis elegans] ref|NP_492527.1| Kinesin-Like Protein family member (klp-16) [Caenorhabditis elegans] dbj|BAA92264.1| kinesin like protein [Caenorhabditis elegans] 0.0
blast AAB37830 Kinesin-like protein protein 15 [Caenorhabditis elegans] ref|NP_491633.1| M01E11.6 [Caenorhabditis elegans] 0.0
blast BAA92263.2 kinesin like protein-15 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 7.8E-113
Sequence
Target Sequence 
>C. ELEGANS:193446_S_AT
accttctcagtggccgagacgttgtccaacttcgtttgaacgatcaaacggtttccatga
ttgggctatccgaacacacgatttccaatgtttcggatgtggctaggctgcttcgtgtag
cagacggaggcaggaagacggcggcgacgaagtgcaatgggagctcgtctcgttcgcacg
ccgtttatatgtggaagatcaaagcacatcagccatcaactggtatttcaacaacgtgcc
aactcaaacttgtggatctcgcaggatcggaacgtgccaaggagtctggagtcagtggcg
accagttcaaggagatgactaatatcaaccagtcgttgtctatccttcagatgtgcatca
gccagcagagatcccagaagggacatgtttcatatcgcgacagcaaactgacacaggtgc
tgatggactgcttgggacgtggcagctcgaagacgatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTTCTCAGTGGCCGAGACGTTGT 584 87 1169 Antisense
TCAGTGGCCGAGACGTTGTCCAACT 445 623 1175 Antisense
TTCCATGATTGGGCTATCCGAACAC 91 699 1221 Antisense
GCTATCCGAACACACGATTTCCAAT 526 303 1233 Antisense
ATGTTTCGGATGTGGCTAGGCTGCT 649 45 1256 Antisense
GGCTAGGCTGCTTCGTGTAGCAGAC 285 537 1269 Antisense
ACGGCGGCGACGAAGTGCAATGGGA 94 97 1306 Antisense
GATCAAAGCACATCAGCCATCAACT 396 421 1365 Antisense
GGTATTTCAACAACGTGCCAACTCA 458 503 1390 Antisense
AACGTGCCAACTCAAACTTGTGGAT 677 143 1401 Antisense
GGACGTGGCAGCTCGAAGACGATGG 278 523 1603 Antisense
Sequence Source Affymetrix Proprietary Database