[Home] | [Total List]

[193445_s_at] 7 transmembrane receptor (rhodopsin family) /// 7 transmembrane receptor (rhodopsin family)

Description T26E4.14 /REP_DB=WormBase Gene ID /WP=CE16485 /TR=O45832 /GB=CAB03427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 93      4grp_total > 09      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 6.1
(-3)
A 		9.6
(-2.8)
A 		9.4
(-2.8)
A 		111.3
(3)
A 		105
B 6
(-2.8)
A 		9.9
(-1.6)
A 		5.3
(-3)
A 		25.6
(3)
A 		20
C 7.9
(-3)
A 		10.1
(-2.9)
A 		34.2
(-1.7)
A 		127.7
(3)
A 		120
avr 6.7
(-3) 		9.9
(-2.8) 		16.3
(-2.3) 		88.2
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 4.4
(-2.9)
A 		3.8
(-3)
A 		58.2
(3)
A 		4.1
(-3)
A 		50.8
(2.2)
A 		24.4
(-0.7)
A 		54
B 15.6
(-2)
A 		51.7
(1.9)
A 		6
(-3)
A 		8.2
(-2.8)
A 		61.9
(3)
A 		31.9
(-0.2)
A 		56
C 3.9
(-2.9)
A 		34.1
(3)
A 		7.5
(-2.2)
A 		6.4
(-2.4)
A 		6.2
(-2.5)
A 		3.5
(-3)
A 		31
avr 8
(-2.7) 		29.9
(1.3) 		23.9
(0.2) 		6.2
(-3) 		39.6
(3) 		19.9
(-0.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.2
(-3)
A 		2.1
(-3)
A 		2.5
(-2.8)
A 		16.3
(3)
A 		14
B 1.9
(-2)
A 		2.4
(-1.3)
A 		1.2
(-3)
A 		5.5
(3)
A 		4
C 2.6
(-3)
A 		2.9
(-2.9)
A 		11.9
(-0)
A 		21.5
(3)
A 		19
avr 2.2
(-3) 		2.5
(-2.9) 		5.2
(-1.5) 		14.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.3
(-2.8)
A 		12.7
(1.9)
A 		1
(-2.9)
A 		15.3
(3)
A 		5.9
(-0.9)
A 		15
B 5.4
(-2)
A 		17.2
(1)
A 		1.5
(-3)
A 		2.2
(-2.8)
A 		25.2
(3)
A 		11.9
(-0.4)
A 		24
C 1.4
(-2.9)
A 		10.4
(3)
A 		1.9
(-2.5)
A 		1.3
(-2.9)
A 		2
(-2.5)
A 		1.2
(-3)
A 		9
avr 2.5
(-2.5) 		9.6
(0.8) 		5.4
(-1.2) 		1.5
(-3) 		14.2
(3) 		6.3
(-0.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193445_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13162
Sequence Type Exemplar sequence
Representative Public ID T26E4.14 NCBI
Target Description T26E4.14 /REP_DB=WormBase Gene ID /WP=CE16485 /TR=O45832 /GB=CAB03427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074543(11), NM_074375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074543 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-38) (srsx-38) mRNA, complete cds. 11/11 A 
NM_074375 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-39) (srsx-39) mRNA, complete cds. 11/11 A 
SNAP00000017601 ENSEMBL cdna:SNAP chromosome:CEL140:V:15808494:15810104:-1 11/11 None
GENEFINDER00000017612 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15808100:15810104:-1 11/11 None
GENEFINDER00000027847 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15257718:15259355:-1 11/11 None
M01B2.9 ENSEMBL cdna:known chromosome:CEL140:V:15258275:15259355:-1 gene:M01B2.9 11/11 A 
T26E4.14 ENSEMBL cdna:known chromosome:CEL140:V:15809020:15810104:-1 gene:T26E4.14 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027838 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15809019-15810104(-) 100.0 100.0
chrV:15258274-15259355(-) 96.23 96.23
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
7 transmembrane receptor (rhodopsin family)
Gene Symbol srsx-39
srsx-38
Ensembl M01B2.9
T26E4.14
Entrez Gene 187360 Entrez gene
188940 Entrez gene
SwissProt O17960 EMBL-EBI
O45832 EMBL-EBI
WormBase CE38208 Wormbase
CE38228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-177
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-174
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-164
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-164
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-163
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-148
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-138
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506944.2 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
NP_506776.2 7 4-26,38-60,75-97,117-139,164-186,199-218,238-260
M01B2.9 5 4-26,39-61,126-148,161-180,200-222
T26E4.14 6 5-27,42-64,85-107,122-144,165-187,197-219
SNAP00000017601 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
GENEFINDER00000017612 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
GENEFINDER00000027847 5 4-26,39-61,126-148,161-180,200-222
Sequence
Target Sequence 
>C. ELEGANS:193445_S_AT
atggttatggtgactttttattgcaaaaacctccgctcgatttgcaacattctaatcgga
ttctgttgcttctgcgatctacttcttttcacagacataattgctttcatgatctctatg
ttcatgcccattactcaagaattctgttactttatgagcatccccgcagattttggagca
tttgcatcgagcgcatgtgtactggctgttggaattgaccgccttattgctgtagctctt
ccggcaagaatcgtggtttgtctagttcccgaatcgctgggacatgcgtatgacgtgttc
gcgctcacttcttttgtcattaaccttttcgtgtcaccaatctatgcctatgtctacatg
aaaatcaaaaaaatgggattgaacagctcaatgaaagcggtttttaagtcactcacgatt
accgtatgtcttgtgctttgtggttggatggctacagacacagtcggagcactttcacta
acacttccgatagacaagaatgtggccagaatgatgcagttgtacgcaggagttttcatt
ctttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTATGGTGACTTTTTATTGCA 461 51 88 Antisense
CTCCGCTCGATTTGCAACATTCTAA 294 235 118 Antisense
AATTGCTTTCATGATCTCTATGTTC 314 179 186 Antisense
CTCTATGTTCATGCCCATTACTCAA 216 231 201 Antisense
TCTGTTACTTTATGAGCATCCCCGC 107 609 230 Antisense
AGCATCCCCGCAGATTTTGGAGCAT 499 77 244 Antisense
GGAGCATTTGCATCGAGCGCATGTG 571 519 262 Antisense
GATTACCGTATGTCTTGTGCTTTGT 427 429 504 Antisense
GTGCTTTGTGGTTGGATGGCTACAG 521 479 520 Antisense
CACTTTCACTAACACTTCCGATAGA 687 195 557 Antisense
GTACGCAGGAGTTTTCATTCTTTCT 143 459 609 Antisense
Sequence Source Affymetrix Proprietary Database