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[193444_at] 7 transmembrane receptor (rhodopsin family)

Description T26E4.14 /REP_DB=WormBase Gene ID /WP=CE16485 /TR=O45832 /GB=CAB03427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 52      4grp_total > 04      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 17
(-2.5)
A 		9.7
(-3)
A 		24.2
(-2)
A 		97.8
(3)
A 		88
B 37.2
(2)
A 		18.3
(-3)
A 		33.3
(1)
A 		41
(3)
P 		23
C 21.4
(-1.3)
A 		12
(-2.1)
A 		1.7
(-3)
A 		70.7
(3)
P 		69
avr 25.2
(-1.7) 		13.3
(-3) 		19.7
(-2.3) 		69.8
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 5.5
(-3)
A 		15.9
(-1)
A 		29.2
(1.5)
A 		9.7
(-2.2)
A 		37.3
(3)
A 		22.9
(0.3)
A 		32
B 27.6
(3)
A 		16.3
(0.2)
A 		19.9
(1.1)
A 		4.6
(-2.6)
A 		22.3
(1.7)
A 		3.1
(-3)
A 		25
C 17
(-1.7)
A 		19
(-1.3)
A 		28.5
(0.6)
A 		40.6
(3)
A 		10.7
(-3)
A 		17
(-1.7)
A 		30
avr 16.7
(-1.8) 		17.1
(-1.6) 		25.9
(3) 		18.3
(-0.9) 		23.4
(1.7) 		14.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.2
(-1)
A 		2.1
(-3)
A 		6.3
(-0.9)
A 		14.3
(3)
A 		12
B 11.9
(3)
A 		4.5
(-3)
A 		7.7
(-0.4)
A 		8.7
(0.4)
P 		7
C 7.1
(0.5)
A 		3.4
(-1.5)
A 		0.6
(-3)
A 		11.9
(3)
P 		11
avr 8.4
(0.7) 		3.3
(-3) 		4.9
(-1.8) 		11.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-3)
A 		5.7
(-0.3)
A 		6.4
(0.1)
A 		2.5
(-2.1)
A 		11.3
(3)
A 		5.6
(-0.3)
A 		10
B 9.6
(3)
A 		5.4
(0)
A 		4.8
(-0.4)
A 		1.2
(-3)
A 		9.1
(2.6)
A 		1.2
(-3)
A 		8
C 6.3
(0.6)
A 		5.8
(-0.1)
A 		7.2
(1.7)
A 		8.2
(3)
A 		3.5
(-3)
A 		5.7
(-0.2)
A 		5
avr 5.6
(-0.6) 		5.6
(-0.6) 		6.1
(0.1) 		4
(-3) 		8
(3) 		4.2
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13162
Sequence Type Exemplar sequence
Representative Public ID T26E4.14 NCBI
Target Description T26E4.14 /REP_DB=WormBase Gene ID /WP=CE16485 /TR=O45832 /GB=CAB03427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074543 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-38) (srsx-38) mRNA, complete cds. 11/11 A 
SNAP00000017601 ENSEMBL cdna:SNAP chromosome:CEL140:V:15808494:15810104:-1 11/11 None
GENEFINDER00000017612 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15808100:15810104:-1 11/11 None
T26E4.14 ENSEMBL cdna:known chromosome:CEL140:V:15809020:15810104:-1 gene:T26E4.14 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15809019-15810104(-) 100.0 100.0
chrV:15258274-15259355(-) 96.23 96.23
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol srsx-38
Ensembl T26E4.14
Entrez Gene 188940 Entrez gene
SwissProt O45832 EMBL-EBI
WormBase CE38228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-174
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-164
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-163
blast CAH10781 Hypothetical protein F53F8.2 [Caenorhabditis elegans] emb|CAB04462.2| Hypothetical protein F53F8.2 [Caenorhabditis elegans] ref|NP_507994.2| Serpentine Receptor, class SX family member (srsx-35) [Caenorhabditis elegans] 1.0E-123
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-116
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506944.2 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
T26E4.14 6 5-27,42-64,85-107,122-144,165-187,197-219
SNAP00000017601 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
GENEFINDER00000017612 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
Sequence
Target Sequence 
>C. ELEGANS:193444_AT
gaatcgtggtttgtctagttcccgaatcgctgggacatgcgtatgacgtgttcgcgctca
cttcttttgtcattaaccttttcgtgtcaccaatctatgcctatgtctacatgaaaatca
aaaaaatgggattgaacagctcaatgaaagcggtttttaagtcactcacgattaccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGTGGTTTGTCTAGTTCCCGA 144 329 335 Antisense
TTTGTCTAGTTCCCGAATCGCTGGG 710 659 344 Antisense
GTTCCCGAATCGCTGGGACATGCGT 120 441 352 Antisense
TGGGACATGCGTATGACGTGTTCGC 144 553 365 Antisense
CGCTCACTTCTTTTGTCATTAACCT 600 255 389 Antisense
TCACTTCTTTTGTCATTAACCTTTT 295 627 392 Antisense
ACCTTTTCGTGTCACCAATCTATGC 220 87 410 Antisense
TGTCACCAATCTATGCCTATGTCTA 693 557 419 Antisense
CAATCTATGCCTATGTCTACATGAA 3 183 425 Antisense
GAAAGCGGTTTTTAAGTCACTCACG 667 359 480 Antisense
TTTTAAGTCACTCACGATTACCGTA 369 603 489 Antisense
Sequence Source Affymetrix Proprietary Database