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[193443_s_at] chromosomal organisation modifier protein

Description T09A5.8 /REP_DB=WormBase Gene ID /WP=CE01089 /TR=SW:P45968 /GB=CAA85339.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chromosomal organisation modifier protein
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 78      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 83      6grp_total > 88      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 433.3
(2.1)
P 		378.5
(0.4)
P 		273.9
(-3)
P 		460.5
(3)
P 		187
B 399.3
(3)
P 		315.4
(-3)
P 		355.3
(-0.1)
P 		366.2
(0.6)
P 		84
C 400.2
(-0.7)
P 		354.3
(-3)
P 		360.2
(-2.7)
P 		472.7
(3)
P 		118
avr 410.9
(1.7) 		349.4
(-1.9) 		329.8
(-3) 		433.1
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 446.4
(-1.1)
P 		367.8
(-2.2)
P 		308.6
(-3)
P 		482.6
(-0.6)
P 		655.3
(1.7)
P 		750.7
(3)
P 		442
B 397.4
(-1.8)
P 		326.4
(-3)
P 		397.5
(-1.8)
P 		416.6
(-1.4)
P 		443.6
(-1)
P 		672.3
(3)
P 		346
C 468.7
(-0.8)
P 		334.3
(-2.7)
P 		311
(-3)
P 		414.9
(-1.5)
P 		575.4
(0.7)
P 		734.2
(3)
P 		423
avr 437.5
(-1.4) 		342.8
(-2.9) 		339
(-3) 		438
(-1.4) 		558.1
(0.5) 		719.1
(3) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 157.8
(3)
P 		82.2
(-2)
P 		71.6
(-2.7)
P 		67.4
(-3)
P 		90
B 127.3
(3)
P 		77.9
(-3)
P 		82.3
(-2.5)
P 		78
(-3)
P 		49
C 132.5
(3)
P 		101.9
(-0.5)
P 		125.5
(2.2)
P 		79.7
(-3)
P 		53
avr 139.2
(3) 		87.3
(-1.9) 		93.1
(-1.3) 		75
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 82.3
(-2.3)
P 		130.8
(-0.1)
P 		67.2
(-3)
P 		122.4
(-0.5)
P 		197.7
(3)
P 		182.8
(2.3)
P 		131
B 138.3
(-1.4)
P 		108.6
(-2.5)
P 		96.5
(-3)
P 		110.3
(-2.5)
P 		180.2
(0.3)
P 		250.7
(3)
P 		154
C 173.7
(0.4)
P 		102
(-2.2)
P 		79.1
(-3)
P 		83.4
(-2.8)
P 		186.2
(0.9)
P 		245.8
(3)
P 		167
avr 131.4
(-0.9) 		113.8
(-1.6) 		80.9
(-3) 		105.4
(-2) 		188
(1.4) 		226.4
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193443_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4433
Sequence Type Exemplar sequence
Representative Public ID T09A5.8 NCBI
Target Description T09A5.8 /REP_DB=WormBase Gene ID /WP=CE01089 /TR=SW:P45968 /GB=CAA85339.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chromosomal organisation modifier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063251 NCBI Caenorhabditis elegans T09A5.8 (T09A5.8) mRNA, complete cds. 11/11 None
SNAP00000029438 ENSEMBL cdna:SNAP chromosome:CEL140:II:7856000:7857390:-1 11/11 None
GENEFINDER00000029449 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7856000:7858145:-1 11/11 None
T09A5.8 ENSEMBL cdna:known chromosome:CEL140:II:7855801:7857489:-1 gene:T09A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7855996-7857387(-) 100.0 100.0
Public Domain and Genome References
Gene Title chromosomal organisation modifier protein
Ensembl T09A5.8
Entrez Gene 174265 Entrez gene
SwissProt P45968 EMBL-EBI
WormBase CE01089 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85339 Hypothetical protein T09A5.8 [Caenorhabditis elegans] ref|NP_495652.1| T09A5.8 [Caenorhabditis elegans] sp|P45968|YNZ8_CAEEL Hypothetical protein T09A5.8 in chromosome III 1.0E-133
blast CAE59834 Hypothetical protein CBG03306 [Caenorhabditis briggsae] 8.0E-32
blast CAE59834 Hypothetical protein CBG03306 [Caenorhabditis briggsae] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000953 EMBL-EBI Chromo 1.3E-20
Pfam IPR000953 EMBL-EBI Chromo 1.3E-20
Sequence
Target Sequence 
>C. ELEGANS:193443_S_AT
acgaagcaacggtttctggtccagtagctccaaacaatgcgaagaaagctgcaatggaag
ttcgtgatacccgaagaaattggcttgatgaagaatcttccgatgacgaggcagaaacta
cggcgccactcagtgatgttgagaaaatagcgagcaaagtaaaagtagtgaaggcagttg
aggaaaaagcagaagaacctgtcaagcgaccatctacaccaccaaagccaagagaggtcg
ttataaagaaagacccaagcgaaagtccagttgccagcgcatcttcagttatcccaacgt
ctaagagaaagtctataaatgcggaaacatcaaatggccgtcaaagaactcttgctcccc
cagtcattgtgaaagatgaaacaacctggactgttgatggtattgctcgtcacactgatg
tcgacaacactaaaacgaagctgatactgatgaccaactccgccactggtgaacgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAAGCAACGGTTTCTGGTCCAGT 126 93 476 Antisense
GGTCCAGTAGCTCCAAACAATGCGA 79 503 493 Antisense
AACTACGGCGCCACTCAGTGATGTT 465 139 591 Antisense
GAACCTGTCAAGCGACCATCTACAC 245 347 670 Antisense
GACCCAAGCGAAAGTCCAGTTGCCA 520 381 727 Antisense
CATCTTCAGTTATCCCAACGTCTAA 328 213 755 Antisense
TGCTCCCCCAGTCATTGTGAAAGAT 525 579 828 Antisense
GACTGTTGATGGTATTGCTCGTCAC 316 375 864 Antisense
TGCTCGTCACACTGATGTCGACAAC 302 581 879 Antisense
AGCTGATACTGATGACCAACTCCGC 504 81 914 Antisense
CAACTCCGCCACTGGTGAACGAAAA 660 177 930 Antisense
Sequence Source Affymetrix Proprietary Database