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[193442_at] 1-acyl-glycerol-3-phosphate acyltransferase

Description F55A11.5 /REP_DB=WormBase Gene ID /WP=CE05947 /TR=Q20800 /GB=CAA96659.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=1-acyl-glycerol-3-phosphate acyltransferase
Cluster 6grp_high1_10_10 > 70      6grp_total > 30      4grp_total > 49      6grp_cgc > 73      6grp_high1_sub > 04      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 16
(-3)
A 		130.8
(3)
P 		83.4
(0.5)
P 		54.9
(-1)
A 		115
B 32.3
(-3)
A 		81.1
(2.9)
P 		81.8
(3)
P 		33.3
(-2.9)
A 		50
C 30
(-3)
A 		88.9
(3)
P 		77.1
(1.8)
P 		42.7
(-1.7)
A 		59
avr 26.1
(-3) 		100.3
(3) 		80.8
(1.4) 		43.6
(-1.6) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 50.7
(-0.7)
A 		89.7
(2.1)
P 		101.1
(2.9)
P 		102.9
(3)
P 		66.2
(0.4)
P 		17.8
(-3)
A 		85
B 65.8
(-0.1)
P 		90
(3)
P 		85.6
(2.4)
P 		86.5
(2.5)
P 		65.6
(-0.1)
P 		43.4
(-3)
P 		47
C 76.5
(1)
P 		104.1
(2.8)
P 		53
(-0.5)
P 		107.5
(3)
P 		50.1
(-0.6)
A 		13.1
(-3)
A 		94
avr 64.3
(0.2) 		94.6
(2.6) 		79.9
(1.5) 		99
(3) 		60.6
(-0.1) 		24.8
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 5.8
(-3)
A 		28.4
(3)
P 		21.8
(1.2)
P 		8
(-2.4)
A 		23
B 10.3
(-1.5)
A 		20
(3)
P 		19
(2.5)
P 		7.1
(-3)
A 		13
C 9.9
(-2.2)
A 		25.6
(2.6)
P 		26.9
(3)
P 		7.2
(-3)
A 		20
avr 8.7
(-2.5) 		24.7
(3) 		22.6
(2.3) 		7.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 9.4
(-1.9)
A 		31.9
(3)
P 		22
(0.8)
P 		26.1
(1.7)
P 		20
(0.4)
P 		4.3
(-3)
A 		28
B 22.9
(-0.1)
P 		30
(3)
P 		20.8
(-1)
P 		22.9
(-0.1)
P 		26.7
(1.6)
P 		16.2
(-3)
P 		14
C 28.3
(2.2)
P 		31.8
(3)
P 		13.5
(-1)
P 		21.6
(0.8)
P 		16.2
(-0.4)
A 		4.4
(-3)
A 		27
avr 20.2
(0.1) 		31.2
(3) 		18.8
(-0.2) 		23.5
(1) 		21
(0.3) 		8.3
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13121
Sequence Type Exemplar sequence
Representative Public ID F55A11.5 NCBI
Target Description F55A11.5 /REP_DB=WormBase Gene ID /WP=CE05947 /TR=Q20800 /GB=CAA96659.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=1-acyl-glycerol-3-phosphate acyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073570 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-10) (acl-10) mRNA, complete cds. 11/11 None
GENEFINDER00000030965 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11773844:11779444:1 10/11 None
F55A11.5 ENSEMBL cdna:known chromosome:CEL140:V:11776683:11779079:1 gene:F55A11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030957 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11776682-11779079(+) 97.65 100.0
Public Domain and Genome References
Gene Title 1-acyl-glycerol-3-phosphate acyltransferase
Gene Symbol acl-10
Ensembl F55A11.5
Entrez Gene 186277 Entrez gene
SwissProt Q20800 EMBL-EBI
WormBase CE05947 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96659 Hypothetical protein F55A11.5 [Caenorhabditis elegans] ref|NP_505971.1| ACyLtransferase-like family member (acl-10) [Caenorhabditis elegans] 0.0
blast CAA96658 Hypothetical protein F55A11.4 [Caenorhabditis elegans] ref|NP_505970.1| F55A11.4 [Caenorhabditis elegans] sp|Q20799|CMC2_CAEEL Probable calcium-binding mitochondrial carrier F55A11.4 0.0
blast CAE75300 Hypothetical protein CBG23270 [Caenorhabditis briggsae] 0.0
blast CAE57255 Hypothetical protein CBG00135 [Caenorhabditis briggsae] 0.0
blast CAE75299 Hypothetical protein CBG23269 [Caenorhabditis briggsae] 1.0E-113
blast CAE71886 Hypothetical protein CBG18941 [Caenorhabditis briggsae] 4.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 6.0E-36
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 6.0E-36
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-36
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.1E-33
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.7E-26
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.3E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.9E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.048
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505971.1 1 388-410
F55A11.5 1 388-410
Sequence
Target Sequence 
>C. ELEGANS:193442_AT
agtccacgagaagtccattttcatattcgaaaaattccaatttcacaagttccacttaac
gagcaggatgcaagtagatggttgacagatcgatggacgattaaagaacaactacttcat
gatttctacagtgaggaacaaccgataaatcgacagtttcctgttgaacgaggagatgga
gtttggagaagtgtaagtccatgttttaaaatgctagtaaaaatagagttcgttccacct
aaaccaagaagtttaaattacataaatatacgcacacagccatttgcaggtgcatatcaa
gagacttttactagcatgtccataaaatatcgcatggaaagaaccaagaaggcattttta
tgtgaaactcacttccttgatgttttggacacttgtaatctcattttgctcttatcatat
tttcttcgtgaggactctacaggtaacatgaaacagataataataatttctgaagtaatt
atttatttttttcagcttggatttctctactttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCACGAGAAGTCCATTTTCATA 548 59 703 Antisense
ATTCCAATTTCACAAGTTCCACTTA 464 1 736 Antisense
AACAACTACTTCATGATTTCTACAG 299 135 809 Antisense
ACCGATAAATCGACAGTTTCCTGTT 275 89 843 Antisense
ATACGCACACAGCCATTTGCAGGTG 634 21 970 Antisense
AGAGACTTTTACTAGCATGTCCATA 19 69 1002 Antisense
ATGTGAAACTCACTTCCTTGATGTT 29 49 1062 Antisense
TGGACACTTGTAATCTCATTTTGCT 38 549 1088 Antisense
ATTTTGCTCTTATCATATTTTCTTC 260 15 1105 Antisense
ATATTTTCTTCGTGAGGACTCTACA 362 17 1119 Antisense
TCAGCTTGGATTTCTCTACTTTTTT 72 625 1194 Antisense
Sequence Source Affymetrix Proprietary Database