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[193441_s_at] 7 transmembrane receptor (rhodopsin family) /// 7 transmembrane receptor (rhodopsin family)

Description T26E4.15 /REP_DB=WormBase Gene ID /WP=CE16486 /TR=O45831 /GB=CAB03426.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 10      4grp_total > 12      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 41
(-0.4)
A 		29.4
(-1.4)
A 		9.7
(-3)
A 		82.4
(3)
P 		73
B 39
(-0.6)
A 		13.9
(-2.4)
A 		5.4
(-3)
A 		90.1
(3)
P 		85
C 26.3
(-1.4)
A 		34.6
(-0.9)
A 		3.4
(-3)
A 		91.9
(3)
P 		89
avr 35.4
(-0.9) 		26
(-1.5) 		6.2
(-3) 		88.1
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3.1
(-3)
A 		25.3
(0.5)
A 		41.6
(3)
P 		3.4
(-3)
A 		33.1
(1.7)
A 		12.4
(-1.6)
A 		39
B 19.1
(0.2)
A 		16.8
(-0.4)
A 		31.2
(3)
A 		10.9
(-1.7)
A 		31.4
(3)
A 		5.5
(-3)
A 		26
C 10.5
(-2)
A 		54.7
(3)
A 		11.7
(-1.8)
A 		30.6
(0.3)
A 		1.5
(-3)
A 		30
(0.2)
A 		53
avr 10.9
(-3) 		32.3
(3) 		28.2
(1.9) 		15
(-1.9) 		22
(0.1) 		16
(-1.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.9
(3)
A 		6.4
(-1.1)
A 		2.5
(-3)
A 		12.1
(1.6)
P 		12
B 12.4
(0.7)
A 		3.4
(-2.3)
A 		1.3
(-3)
A 		19.2
(3)
P 		18
C 8.7
(0.1)
A 		9.9
(0.7)
A 		1.2
(-3)
A 		15.5
(3)
P 		14
avr 12
(1.4) 		6.6
(-0.9) 		1.7
(-3) 		15.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.6
(-3)
A 		9
(2.4)
A 		9.1
(2.4)
P 		0.9
(-2.8)
A 		10
(3)
A 		3
(-1.5)
A 		9
B 6.6
(-0.5)
A 		5.6
(-1)
A 		7.6
(0.1)
A 		2.9
(-2.6)
A 		12.8
(3)
A 		2.1
(-3)
A 		11
C 3.9
(-1.7)
A 		16.7
(3)
A 		3
(-2.1)
A 		6.1
(-0.9)
A 		0.5
(-3)
A 		10
(0.5)
A 		16
avr 3.7
(-2.7) 		10.4
(3) 		6.6
(-0.2) 		3.3
(-3) 		7.8
(0.8) 		5
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193441_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13271
Sequence Type Exemplar sequence
Representative Public ID T26E4.15 NCBI
Target Description T26E4.15 /REP_DB=WormBase Gene ID /WP=CE16486 /TR=O45831 /GB=CAB03426.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074544(11), NM_074376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074544 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-36) (srsx-36) mRNA, complete cds. 11/11 None
NM_074376 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-37) (srsx-37) mRNA, complete cds. 11/11 None
SNAP00000017602 ENSEMBL cdna:SNAP chromosome:CEL140:V:15810703:15812224:-1 11/11 None
GENEFINDER00000017604 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15810703:15812224:-1 11/11 None
SNAP00000027839 ENSEMBL cdna:SNAP chromosome:CEL140:V:15260167:15261735:-1 11/11 None
GENEFINDER00000027845 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15260167:15261735:-1 11/11 None
M01B2.7 ENSEMBL cdna:known chromosome:CEL140:V:15260167:15261735:-1 gene:M01B2.7 11/11 None
T26E4.15 ENSEMBL cdna:known chromosome:CEL140:V:15810703:15812224:-1 gene:T26E4.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15810702-15812224(-) 100.0 100.0
chrV:15260166-15261735(-) 91.54 91.54
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
7 transmembrane receptor (rhodopsin family)
Gene Symbol srsx-37
srsx-36
Ensembl M01B2.7
T26E4.15
Entrez Gene 187358 Entrez gene
188941 Entrez gene
SwissProt O17961 EMBL-EBI
O45831 EMBL-EBI
WormBase CE38207 Wormbase
CE36209 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03426 Hypothetical protein T26E4.15 [Caenorhabditis elegans] ref|NP_506945.2| Serpentine Receptor, class SX family member (srsx-36) [Caenorhabditis elegans] 1.0E-171
blast CAB05565 Hypothetical protein M01B2.7 [Caenorhabditis elegans] ref|NP_506777.2| Serpentine Receptor, class SX family member (srsx-37) [Caenorhabditis elegans] 1.0E-171
blast CAB05565 Hypothetical protein M01B2.7 [Caenorhabditis elegans] ref|NP_506777.2| Serpentine Receptor, class SX family member (srsx-37) [Caenorhabditis elegans] 1.0E-168
blast CAB03426 Hypothetical protein T26E4.15 [Caenorhabditis elegans] ref|NP_506945.2| Serpentine Receptor, class SX family member (srsx-36) [Caenorhabditis elegans] 1.0E-167
blast CAB05565 Hypothetical protein M01B2.7 [Caenorhabditis elegans] ref|NP_506777.2| Serpentine Receptor, class SX family member (srsx-37) [Caenorhabditis elegans] 1.0E-165
blast CAB03426 Hypothetical protein T26E4.15 [Caenorhabditis elegans] ref|NP_506945.2| Serpentine Receptor, class SX family member (srsx-36) [Caenorhabditis elegans] 1.0E-165
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506945.2 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
NP_506777.2 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
M01B2.7 7 5-27,39-61,90-112,133-155,175-197,217-239,249-271
T26E4.15 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
SNAP00000017602 7 4-26,38-60,75-97,118-140,160-182,203-225,235-257
GENEFINDER00000017604 7 4-26,38-60,75-97,143-165,185-207,227-249,259-281
SNAP00000027839 7 5-27,39-61,90-112,133-155,175-197,217-239,249-271
GENEFINDER00000027845 7 5-27,39-61,90-112,133-155,175-197,217-239,249-271
Sequence
Target Sequence 
>C. ELEGANS:193441_S_AT
gaacgctacaagtatttgtttcttcaaatgacgtttccagtcatctattcttcaacttta
ttgattatgggatttggacaacgtgatccaagaagaaatgtggtctgtctactcccagaa
tcattgggtcatgcttatgacatgttcgctctttcttcctttggcattaatctttttgta
ccgccgatctacgcatacgtgtattttaaagtcaaaaatatgagtgacaataattctatc
aaaaccgttttcaaatcactatcggttactgtatggtttgtcgtgtgcggttggatgaca
actgacttgattggtgcgcttacagtaatacttccgatggataggagcgtggcaagaatg
gttcagctctactgtggaacttttatattcacgtcgagtgcttttaatgcagttgtgtat
tataaattcagccgtgactatcgttcagcaatgcgtacaatgctgggtctgtccaatgaa
gtttccatagctgatattaatatctatcaacaagcttccgatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGCTACAAGTATTTGTTTCTTC 471 347 427 Antisense
GTTTCTTCAAATGACGTTTCCAGTC 558 449 444 Antisense
GTTTCCAGTCATCTATTCTTCAACT 374 451 459 Antisense
GTCTGTCTACTCCCAGAATCATTGG 483 471 529 Antisense
GTTTTCAAATCACTATCGGTTACTG 703 447 673 Antisense
GTCGTGTGCGGTTGGATGACAACTG 357 473 706 Antisense
GGTGCGCTTACAGTAATACTTCCGA 403 501 739 Antisense
GTGGCAAGAATGGTTCAGCTCTACT 441 491 775 Antisense
TCAGCTCTACTGTGGAACTTTTATA 605 623 789 Antisense
TTCACGTCGAGTGCTTTTAATGCAG 470 687 814 Antisense
ATCTATCAACAAGCTTCCGATCCAC 658 31 928 Antisense
Sequence Source Affymetrix Proprietary Database