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[193440_s_at]

Description M04C9.6B /REP_DB=WormBase Gene ID /WP=CE12412 /TR=P90935 /GB=CAB06024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein phosphatase regulatory subunit like
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 362
(3)
P 		208.4
(-1.6)
P 		159.5
(-3)
P 		236.3
(-0.7)
P 		203
B 392.4
(3)
P 		161.4
(-3)
P 		187.2
(-2.3)
P 		170.4
(-2.8)
P 		231
C 343.8
(3)
P 		183.7
(-3)
P 		213.2
(-1.9)
P 		226.8
(-1.4)
P 		160
avr 366.1
(3) 		184.5
(-3) 		186.6
(-2.9) 		211.2
(-2.1) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 442.8
(3)
P 		382.7
(1.7)
P 		170.3
(-3)
P 		211.8
(-2.1)
P 		193.3
(-2.5)
P 		280.7
(-0.6)
P 		273
B 446.5
(3)
P 		376.9
(1.3)
P 		389.4
(1.6)
P 		299.1
(-0.5)
P 		193.8
(-3)
P 		238.6
(-1.9)
P 		253
C 514.5
(3)
P 		386.4
(0.4)
P 		297.1
(-1.5)
P 		244.2
(-2.5)
P 		221.5
(-3)
P 		240.4
(-2.6)
P 		293
avr 467.9
(3) 		382
(1.1) 		285.6
(-1.1) 		251.7
(-1.9) 		202.9
(-3) 		253.2
(-1.9) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 131.8
(3)
P 		45.2
(-2.3)
P 		41.7
(-2.6)
P 		34.6
(-3)
P 		97
B 125.1
(3)
P 		39.9
(-2.8)
P 		43.4
(-2.5)
P 		36.3
(-3)
P 		89
C 113.8
(3)
P 		52.8
(-1.8)
P 		74.3
(-0.1)
P 		38.2
(-3)
P 		76
avr 123.6
(3) 		46
(-2.3) 		53.1
(-1.9) 		36.4
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 81.6
(-0.3)
P 		136.1
(3)
P 		37.1
(-3)
P 		53.7
(-2)
P 		58.3
(-1.7)
P 		68.3
(-1.1)
P 		99
B 155.3
(3)
P 		125.5
(0.7)
P 		94.6
(-1.8)
P 		79.2
(-3)
P 		78.7
(-3)
P 		89
(-2.2)
P 		77
C 190.7
(3)
P 		117.9
(-0.1)
P 		75.6
(-1.9)
P 		49.1
(-3)
P 		71.7
(-2)
P 		80.5
(-1.7)
P 		142
avr 142.5
(3) 		126.5
(1.8) 		69.1
(-2.4) 		60.7
(-3) 		69.6
(-2.3) 		79.3
(-1.6) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193440_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2441
Sequence Type Exemplar sequence
Representative Public ID M04C9.6B NCBI
Target Description M04C9.6B /REP_DB=WormBase Gene ID /WP=CE12412 /TR=P90935 /GB=CAB06024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein phosphatase regulatory subunit like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026217(11), NM_001026218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026217 NCBI Caenorhabditis elegans F16A11.3a (F16A11.3) mRNA, complete cds. 11/11 None
NM_001026218 NCBI Caenorhabditis elegans F16A11.3b (F16A11.3) mRNA, complete cds. 11/11 None
SNAP00000035490 ENSEMBL cdna:SNAP chromosome:CEL140:I:9372900:9380249:-1 11/11 None
GENEFINDER00000035495 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9372900:9376227:-1 11/11 None
F16A11.3a ENSEMBL cdna:known chromosome:CEL140:I:9372297:9397708:-1 gene:F16A11.3 11/11 A 
F16A11.3b ENSEMBL cdna:known chromosome:CEL140:I:9372900:9397708:-1 gene:F16A11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172761 3 2 NM_001026217 174717_at (11), 193440_s_at (11)
NM_001026218 193440_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9372830-9380220(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16A11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10801 Hypothetical protein F16A11.3a [Caenorhabditis elegans] emb|CAH10794.1| Hypothetical protein F16A11.3a [Caenorhabditis elegans] ref|NP_001021388.1| F16A11.3a [Caenorhabditis elegans] 0.0
blast T23714 hypothetical protein M04C9.6a - Caenorhabditis elegans 0.0
blast CAH10800 Hypothetical protein F16A11.3c [Caenorhabditis elegans] emb|CAH10793.1| Hypothetical protein F16A11.3c [Caenorhabditis elegans] ref|NP_001021390.1| F16A11.3c [Caenorhabditis elegans] 0.0
blast CAH10802 Hypothetical protein F16A11.3b [Caenorhabditis elegans] emb|CAH10795.1| Hypothetical protein F16A11.3b [Caenorhabditis elegans] ref|NP_001021389.1| F16A11.3b [Caenorhabditis elegans] 0.0
blast T23713 hypothetical protein M04C9.6b - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000357 EMBL-EBI HEAT 8.7E-9
Pfam IPR000357 EMBL-EBI HEAT 2.7E-8
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 8.7E-9
Pfam IPR000357 EMBL-EBI HEAT 2.7E-8
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:193440_S_AT
gatggtcaaactctccaacgattctgatattgatgcggcattcattgcaaagaagtgtca
aggtttaacagatgatcatcagccagttgatgttgcttcacgaactacacggatgcgtga
acgagaagaacagttctttggagatattattcttagctattctcctggttgtaatgcaag
agtttctggtaaagaaattaaacagttgatccggcatgatcaaggagcagttcagaaagc
agctccacttcaatcaatggaagattttggagatgagatattggctcatgcggcagattc
ggtgaatattcaaacacctccggaagtagttgctactgttcaacgagtctcaattacaaa
tgaacaatttgaggataacactgaagcggttgatatggaaattgaagaggatgaagatga
aaactctacagagaagaaggaaaacactgaaaaaaccgcagaggaagaatctgagaatgt
taagaatactgaggatgaactggatatacctatggatcctgcacctactcttccaccacc
agtgacatcaaaaaatcaatcttcatcacctattacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCAAACTCTCCAACGATTCT 702 405 2883 Antisense
ATCAGCCAGTTGATGTTGCTTCACG 401 29 2960 Antisense
GTTGCTTCACGAACTACACGGATGC 546 437 2974 Antisense
TATTCTTAGCTATTCTCCTGGTTGT 621 663 3030 Antisense
AGAAAGCAGCTCCACTTCAATCAAT 402 71 3116 Antisense
AGATATTGGCTCATGCGGCAGATTC 576 65 3158 Antisense
GAATATTCAAACACCTCCGGAAGTA 562 325 3186 Antisense
AGTAGTTGCTACTGTTCAACGAGTC 394 61 3207 Antisense
ATATACCTATGGATCCTGCACCTAC 553 19 3386 Antisense
TCTTCCACCACCAGTGACATCAAAA 606 617 3411 Antisense
AAATCAATCTTCATCACCTATTACC 247 117 3435 Antisense
Sequence Source Affymetrix Proprietary Database