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[193439_at] 7 transmembrane receptor (rhodopsin family)

Description Y70D2A.1 /REP_DB=WormBase Gene ID /WP=CE22832 /TR=O62168 /GB=CAA16267.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 4grp_high_8_8 > 54      6grp_total > 83      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 107.5
(-2.5)
P 		207.2
(1.9)
P 		232.4
(3)
P 		96.1
(-3)
A 		136
B 173.2
(-1)
P 		245.9
(2.6)
P 		253.1
(3)
P 		132.2
(-3)
P 		121
C 153.7
(-2.4)
P 		231
(2.6)
P 		236.4
(3)
P 		144.8
(-3)
P 		92
avr 144.8
(-1.9) 		228
(2.3) 		240.6
(3) 		124.4
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 67
(-3)
A 		252
(-0.9)
P 		203.4
(-1.4)
P 		312.1
(-0.2)
P 		592.9
(3)
P 		122.6
(-2.4)
P 		526
B 88.2
(-3)
A 		181.1
(-1.4)
P 		233.5
(-0.4)
P 		333
(1.3)
P 		427.4
(3)
P 		178.7
(-1.4)
P 		339
C 118.9
(-3)
M 		217.2
(-1.2)
P 		189.2
(-1.7)
P 		315.8
(0.6)
P 		445.7
(3)
P 		193.4
(-1.6)
P 		327
avr 91.4
(-3) 		216.8
(-1.1) 		208.7
(-1.2) 		320.3
(0.5) 		488.7
(3) 		164.9
(-1.9) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 39.2
(0.2)
P 		45
(1)
P 		60.7
(3)
P 		14.1
(-3)
A 		47
B 55.2
(2)
P 		60.7
(3)
P 		58.6
(2.6)
P 		28.2
(-3)
P 		33
C 50.9
(-0.3)
P 		66.4
(1.3)
P 		82.4
(3)
P 		24.4
(-3)
P 		58
avr 48.4
(0.5) 		57.4
(1.7) 		67.2
(3) 		22.2
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 12.4
(-3)
A 		89.6
(-0.2)
P 		44.3
(-1.9)
P 		79.2
(-0.6)
P 		178.9
(3)
P 		29.8
(-2.4)
P 		167
B 30.7
(-3)
A 		60.3
(-1.8)
P 		56.7
(-1.9)
P 		88.2
(-0.6)
P 		173.7
(3)
P 		66.7
(-1.5)
P 		143
C 44.1
(-3)
M 		66.3
(-1.7)
P 		48.2
(-2.8)
P 		63.5
(-1.8)
P 		144.2
(3)
P 		64.7
(-1.8)
P 		100
avr 29.1
(-3) 		72.1
(-1.1) 		49.7
(-2.1) 		77
(-0.9) 		165.6
(3) 		53.7
(-1.9) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17478
Sequence Type Exemplar sequence
Representative Public ID Y70D2A.1 NCBI
Target Description Y70D2A.1 /REP_DB=WormBase Gene ID /WP=CE22832 /TR=O62168 /GB=CAA16267.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078075 NCBI Caenorhabditis elegans Y70D2A.1 (Y70D2A.1) mRNA, complete cds. 11/11 None
SNAP00000039273 ENSEMBL cdna:SNAP chromosome:CEL140:X:14922463:14923804:1 11/11 None
GENEFINDER00000039278 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14922706:14923804:1 10/11 None
Y70D2A.1 ENSEMBL cdna:known chromosome:CEL140:X:14920842:14923804:1 gene:Y70D2A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14920841-14923804(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl Y70D2A.1
Entrez Gene 190571 Entrez gene
SwissProt O62168 EMBL-EBI
WormBase CE34231 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22079 Hypothetical protein Y70D2A.1 [Caenorhabditis elegans] emb|CAA16267.2| Hypothetical protein Y70D2A.1 [Caenorhabditis elegans] ref|NP_510476.2| Y70D2A.1 [Caenorhabditis elegans] 0.0
blast CAE63282 Hypothetical protein CBG07661 [Caenorhabditis briggsae] 0.0
blast CAA22079 Hypothetical protein Y70D2A.1 [Caenorhabditis elegans] emb|CAA16267.2| Hypothetical protein Y70D2A.1 [Caenorhabditis elegans] ref|NP_510476.2| Y70D2A.1 [Caenorhabditis elegans] 1.0E-122
blast CAE63282 Hypothetical protein CBG07661 [Caenorhabditis briggsae] 1.0E-116
blast CAA22079 Hypothetical protein Y70D2A.1 [Caenorhabditis elegans] emb|CAA16267.2| Hypothetical protein Y70D2A.1 [Caenorhabditis elegans] ref|NP_510476.2| Y70D2A.1 [Caenorhabditis elegans] 8.0E-88
blast CAE63282 Hypothetical protein CBG07661 [Caenorhabditis briggsae] 2.0E-81
blast AAM51506 Hypothetical protein B0563.6b [Caenorhabditis elegans] ref|NP_741870.2| B0563.6b [Caenorhabditis elegans] 5.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510476.2 7 38-60,73-95,115-137,157-176,218-237,269-291,306-328
Y70D2A.1 7 38-60,73-95,115-137,157-176,218-237,269-291,306-328
SNAP00000039273 3 29-48,80-102,117-139
GENEFINDER00000039278 2 23-45,60-82
Sequence
Target Sequence 
>C. ELEGANS:193439_AT
aggatggagcggctggcaaactctcagaaaaagtttatgttcgaaaagagcgagaaggag
gagaagcgactttttatattgctctttgcaattgtcattgtgttctttgtgtgcactatt
ccagcagctccactcactattttagtggcggatacgaaaaataacaatgtcggatttcaa
atcttccgagcagttgtgaacttactagaatttaccaagttcgcaatgaatttctacttt
tactgtctcatcaatccagacatccgcagtatttgtgcgcacgtaattacatgtaagaag
atcacaaagcctgcgagagtaaagggtcaaccaactactccactttcgaaatatacaaga
tctacaaaaaattccacaattcgcgacgcaaacaagaatggtgaaaagcgaggaatcgac
ggcaacgataatgattcaaagaaattcgatgactctagaaatagctcgttgaaatctgga
aaagattccgttcggcggggagtacctgcggacagtttaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATGGAGCGGCTGGCAAACTCTC 336 57 646 Antisense
GCGACTTTTTATATTGCTCTTTGCA 418 289 711 Antisense
ATTGTCATTGTGTTCTTTGTGTGCA 393 5 736 Antisense
TTTGTGTGCACTATTCCAGCAGCTC 540 665 751 Antisense
AAATCTTCCGAGCAGTTGTGAACTT 134 117 824 Antisense
GAATTTCTACTTTTACTGTCTCATC 442 325 873 Antisense
GTCTCATCAATCCAGACATCCGCAG 4 471 890 Antisense
ACATCCGCAGTATTTGTGCGCACGT 6 107 905 Antisense
ACCAACTACTCCACTTTCGAAATAT 26 3 975 Antisense
AATTCCACAATTCGCGACGCAAACA 586 177 1015 Antisense
GGGAGTACCTGCGGACAGTTTAATC 64 495 1143 Antisense
Sequence Source Affymetrix Proprietary Database