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[193438_at] Acetyltransferase (GNAT) family (2 domains)

Description T23G11.2 /REP_DB=WormBase Gene ID /WP=CE16458 /TR=O45811 /GB=CAB03416.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Acetyltransferase (GNAT) family (2 domains)
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      6grp_highest_nonorm > 93      6grp_total > 88      4grp_total > 45      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 149.9
(2.4)
P 		156.3
(3)
A 		113.1
(-1.3)
A 		95.8
(-3)
A 		61
B 122
(-2.7)
P 		172.7
(3)
A 		160.5
(1.6)
A 		118.9
(-3)
M 		54
C 228.6
(3)
P 		157.3
(-1)
A 		121
(-3)
P 		166.4
(-0.5)
A 		108
avr 166.8
(3) 		162.1
(2.3) 		131.5
(-2.3) 		127
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 860
1 2 3 4 5 6 range
A 150.9
(-3)
P 		194.7
(-2.7)
P 		158.7
(-2.9)
P 		262.2
(-2.1)
P 		670.4
(1)
P 		923.5
(3)
P 		773
B 175
(-2.7)
P 		146.1
(-2.9)
P 		130
(-3)
P 		170.5
(-2.7)
P 		684.2
(1.1)
P 		938.5
(3)
P 		809
C 138
(-3)
P 		172.4
(-2.8)
P 		173.6
(-2.7)
P 		200.9
(-2.6)
P 		569.1
(0)
P 		990
(3)
P 		852
avr 154.6
(-3) 		171.1
(-2.9) 		154.1
(-3) 		211.2
(-2.6) 		641.2
(0.7) 		950.7
(3) 		797
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 54.6
(3)
P 		33.9
(-0.1)
A 		29.6
(-0.7)
A 		14
(-3)
A 		41
B 38.9
(1.7)
P 		42.7
(3)
A 		37.2
(1.1)
A 		25.3
(-3)
M 		17
C 75.7
(3)
P 		45.2
(-0.8)
A 		42.2
(-1.2)
P 		28.1
(-3)
A 		48
avr 56.4
(3) 		40.6
(0.2) 		36.3
(-0.6) 		22.5
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 27.8
(-3)
P 		69.2
(-1.7)
P 		34.6
(-2.8)
P 		66.5
(-1.8)
P 		202.3
(2.3)
P 		224.8
(3)
P 		197
B 60.9
(-2.4)
P 		48.6
(-2.7)
P 		31.6
(-3)
P 		45.2
(-2.7)
P 		278
(1.6)
P 		350
(3)
P 		318
C 51.2
(-2.8)
P 		52.6
(-2.7)
P 		44.2
(-2.9)
P 		40.4
(-3)
P 		184.2
(-0)
P 		331.4
(3)
P 		291
avr 46.6
(-2.8) 		56.8
(-2.5) 		36.8
(-3) 		50.7
(-2.7) 		221.5
(1.2) 		302.1
(3) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.993
Sequence Type Exemplar sequence
Representative Public ID T23G11.2 NCBI
Target Description T23G11.2 /REP_DB=WormBase Gene ID /WP=CE16458 /TR=O45811 /GB=CAB03416.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Acetyltransferase (GNAT) family (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059743 NCBI Caenorhabditis elegans Glucosamine phosphate N-Acetyl transferase family member (gna-2) (gna-2) mRNA, complete cds. 11/11 None
SNAP00000027653 ENSEMBL cdna:SNAP chromosome:CEL140:I:7707813:7709001:1 11/11 None
GENEFINDER00000027658 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7707813:7709001:1 11/11 None
T23G11.2.2 ENSEMBL cdna:known chromosome:CEL140:I:7707672:7709088:1 gene:T23G11.2 11/11 None
T23G11.2.1 ENSEMBL cdna:known chromosome:CEL140:I:7707813:7709276:1 gene:T23G11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7707743-7708932(+) 100.0 100.0
Public Domain and Genome References
Gene Title Acetyltransferase (GNAT) family (2 domains)
Gene Symbol gna-2
Ensembl T23G11.2
Entrez Gene 172533 Entrez gene
SwissProt O45811 EMBL-EBI
WormBase CE16458 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03416 Hypothetical protein T23G11.2 [Caenorhabditis elegans] ref|NP_492144.1| Glucosamine phosphate N-Acetyl transferase family member (gna-2) [Caenorhabditis elegans] gb|AAR26304.1| phosphoglucosamine acetyltransferase [Caenorhabditis elegans] 0.0
blast CAE72184 Hypothetical protein CBG19292 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 6.5E-15
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 3.8E-12
Sequence
Target Sequence 
>C. ELEGANS:193438_AT
gaatcttcactttttggatcaacgttttgaagaactggaagctcccgctcggaaatcgtc
tacacctggaaatggatcagttatccttttcaatgagaacgttcttccgacaaatatgaa
acttcctgtcgatatccgtgctcgcgctctccgttccgatgacatgaattatctgaaact
tctggagcaactcacttccgttggatacgtcacgaaaaatgactttgagcaaagattttc
tacaatgaaaaattcagagtcgtatttcatagtagttttagaagatgtaaattcttcaaa
aattgttggtgctgccactcttgtagtcgagctcaagtacattcatgaatgtggacttcg
tggaagagtcgaagatgttgtcgttgatttgacaatgcgtggaaaaaggctgggaattct
tatcaacgaagctctcgttaaaatggcaagaagtcttggagtttataaactttctctgga
atgcaaaacagagcttatcccattctacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTTCACTTTTTGGATCAACGT 625 327 471 Antisense
TTGAAGAACTGGAAGCTCCCGCTCG 292 701 497 Antisense
GGAAATCGTCTACACCTGGAAATGG 419 525 521 Antisense
GAGAACGTTCTTCCGACAAATATGA 419 391 565 Antisense
TGAAACTTCCTGTCGATATCCGTGC 466 573 587 Antisense
CTCTCCGTTCCGATGACATGAATTA 257 231 617 Antisense
AACTCACTTCCGTTGGATACGTCAC 622 135 659 Antisense
AAATTGTTGGTGCTGCCACTCTTGT 395 113 770 Antisense
CTGCCACTCTTGTAGTCGAGCTCAA 113 237 782 Antisense
GGAATTCTTATCAACGAAGCTCTCG 377 533 883 Antisense
AACAGAGCTTATCCCATTCTACAAC 20 137 957 Antisense
Sequence Source Affymetrix Proprietary Database