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[193434_s_at] 60S ribososmal protein L11

Description T22F3.4 /REP_DB=WormBase Gene ID /WP=CE13968 /GEN=rpl-11.1 /TR=SW:Q94300 /GB=AAB18306.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=60S ribososmal protein L11
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 94      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 39      6grp_total > 95      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23520
1 2 3 4 range
A 3650.3
(-3)
P 		8688.4
(-1.7)
P 		10953.9
(-1.1)
P 		26841.4
(3)
P 		23191
B 3321.4
(-3)
P 		7930.3
(-1.7)
P 		10531.1
(-0.9)
P 		24316.2
(3)
P 		20995
C 3342.1
(-3)
P 		7641.5
(-1.8)
P 		10503.4
(-1)
P 		24593.4
(3)
P 		21251
avr 3437.9
(-3) 		8086.7
(-1.7) 		10662.8
(-1) 		25250.3
(3) 		21812

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14926
1 2 3 4 5 6 range
A 2490.2
(-3)
P 		3929.8
(-2.2)
P 		7610
(-0.1)
P 		11023
(1.8)
P 		13113.7
(3)
P 		12732.5
(2.8)
P 		10624
B 2452.1
(-3)
P 		4557.7
(-2)
P 		7914.5
(-0.5)
P 		9781.5
(0.4)
P 		13579.7
(2.1)
P 		15474.4
(3)
P 		13022
C 2203.6
(-3)
P 		4149.5
(-2.2)
P 		6053.8
(-1.5)
P 		10383.9
(0.3)
P 		14162.1
(1.8)
P 		17129.9
(3)
P 		14926
avr 2382
(-3) 		4212.3
(-2.1) 		7192.8
(-0.7) 		10396.1
(0.8) 		13618.5
(2.3) 		15112.3
(3) 		12730
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4123
1 2 3 4 range
A 1329.1
(-3)
P 		1886
(-1.7)
P 		2863.6
(0.5)
P 		3929.1
(3)
P 		2600
B 1059.2
(-3)
P 		1958.6
(-1.7)
P 		2440.3
(-1)
P 		5181.8
(3)
P 		4123
C 1106.3
(-3)
P 		2197
(-0.8)
P 		3660.7
(2)
P 		4146.8
(3)
P 		3041
avr 1164.9
(-3) 		2013.9
(-1.4) 		2988.2
(0.4) 		4419.2
(3) 		3254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5311
1 2 3 4 5 6 range
A 459.1
(-3)
P 		1397.6
(-1.4)
P 		1657.3
(-0.9)
P 		2795.7
(1)
P 		3957.1
(3)
P 		3100
(1.5)
P 		3498
B 853.2
(-3)
P 		1517.1
(-2.2)
P 		1921.9
(-1.7)
P 		2590.8
(-0.9)
P 		5517.3
(2.7)
P 		5770.3
(3)
P 		4917
C 816.8
(-3)
P 		1266.2
(-2.5)
P 		1540.8
(-2.1)
P 		2088.2
(-1.4)
P 		4582.6
(1.6)
P 		5734.4
(3)
P 		4918
avr 709.7
(-3) 		1393.6
(-2) 		1706.7
(-1.6) 		2491.6
(-0.4) 		4685.7
(2.7) 		4868.2
(3) 		4159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193434_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15901
Sequence Type Exemplar sequence
Representative Public ID T22F3.4 NCBI
Target Description T22F3.4 /REP_DB=WormBase Gene ID /WP=CE13968 /GEN=rpl-11.1 /TR=SW:Q94300 /GB=AAB18306.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=60S ribososmal protein L11
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071607 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-11.1) (rpl-11.1) mRNA, complete cds. 11/11 None
SNAP00000034223 ENSEMBL cdna:SNAP chromosome:CEL140:V:3585194:3585883:-1 11/11 None
GENEFINDER00000034232 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3585194:3585883:-1 11/11 None
T22F3.4.1 ENSEMBL cdna:known chromosome:CEL140:V:3585135:3585889:-1 gene:T22F3.4 11/11 None
T22F3.4.2 ENSEMBL cdna:known chromosome:CEL140:V:3585135:3585891:-1 gene:T22F3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3585193-3585883(-) 100.0 100.0
Public Domain and Genome References
Gene Title 60S ribososmal protein L11
Gene Symbol rpl-11.1
Ensembl T22F3.4
Entrez Gene 178778 Entrez gene
SwissProt Q94300 EMBL-EBI
WormBase CE13968 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254617_S_AT 60S ribosomal protein L11 (RPL11D) at
CANINE:1583191_X_AT similar to 60S ribosomal protein L11 cfa
CANINE:1590160_X_AT similar to 60S ribosomal protein L11 cfa
CANINE_2:CFAAFFX.2147.1.S1_S_AT similar to 60S ribosomal protein L11 cfa
DROSOPHILA_2:1630813_AT Ribosomal protein L11 dm
DROSGENOME1:153899_AT Ribosomal protein L11 dm
CHICKEN:GGAAFFX.13031.1.S1_AT ribosomal protein L11 gga
CHICKEN:GGAAFFX.13031.1.S1_S_AT ribosomal protein L11 gga
CHICKEN:GGA.4687.1.S1_AT Similar to 60S ribosomal protein L11 gga
HG-U95AV2:41178_AT ribosomal protein L11 hs
HUGENEFL:X79234_AT ribosomal protein L11 hs
U133_X3P:G4506594_3P_X_AT ribosomal protein L11 hs
U133_X3P:G4506594_3P_AT ribosomal protein L11 hs
HG-U95E:87779_F_AT ribosomal protein L11 hs
HG-FOCUS:200010_AT Ribosomal protein L11 hs
PLASMODIUM_ANOPHELES:200010_AT Ribosomal protein L11 hs
HG-U133A:200010_AT Ribosomal protein L11 hs
HG-U133_PLUS_2:200010_AT Ribosomal protein L11 hs
HG-U133B:200010_AT Ribosomal protein L11 hs
HG-U133A_2:200010_AT Ribosomal protein L11 hs
U133_X3P:200010_AT Ribosomal protein L11 hs
YEAST_2:1777528_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 Sc
YEAST_2:1778560_S_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB18306 Ribosomal protein, large subunit protein 11.1 [Caenorhabditis elegans] ref|NP_504008.1| Ribosomal Protein, Large subunit family member (rpl-11.1) [Caenorhabditis elegans] sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 1.0E-110
blast CAE58218 Hypothetical protein CBG01314 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002132 EMBL-EBI Ribosomal protein L5 6.1E-27
Pfam IPR002132 EMBL-EBI Ribosomal protein L5 7.0E-55
Sequence
Target Sequence 
>C. ELEGANS:193434_S_AT
gggccgcaatgtgatgcgcgagctcaagatccaaaagctctgtctcaacatttgtgttgg
agagtctggagatcgtctcacccgtgccgctaaggtgctcgagcagctcaccggacaaac
cccagtgttctccaaggcccgatacaccgtcagaactttcggaattcgcagaaacgaaaa
gattgctgttcattgcaccgttcgtggaccaaaggctgaggaaatcctcgagaagggact
caaggtcaaggaatacgagcttttcaaagagaacttctctgacactggaaacttcggttt
cggagttcaggagcacattgatctcggaatcaagtacgacccaggaattggaatctacgg
aatggacttctacgtcgttctgaaccgcaacggagttcgagtttccaagcgcagacgtgc
accaggacgcattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCCGCAATGTGATGCGCGAGCTC 697 491 54 Antisense
GATCCAAAAGCTCTGTCTCAACATT 171 415 81 Antisense
GCCCGATACACCGTCAGAACTTTCG 619 285 190 Antisense
TTCATTGCACCGTTCGTGGACCAAA 78 689 242 Antisense
GAACTTCTCTGACACTGGAAACTTC 529 349 324 Antisense
GAGTTCAGGAGCACATTGATCTCGG 29 399 356 Antisense
GATCTCGGAATCAAGTACGACCCAG 414 419 373 Antisense
ATGGACTTCTACGTCGTTCTGAACC 238 53 415 Antisense
GTCGTTCTGAACCGCAACGGAGTTC 607 469 427 Antisense
TCGAGTTTCCAAGCGCAGACGTGCA 690 601 450 Antisense
CAGACGTGCACCAGGACGCATTGGA 170 205 465 Antisense
Sequence Source Affymetrix Proprietary Database