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[193433_at]

Description Y15E3A.1 /REP_DB=WormBase Gene ID /WP=CE27779 /GEN=nhr-91 /TR=Q9U2R6 /GB=CAB60329.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=nuclear hormone receptor nhr-91
Cluster 6grp_total > 09      4grp_total > 57      6grp_cgc > 50      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 106.1
(-3)
A 		335.1
(3)
P 		324
(2.7)
P 		115.8
(-2.7)
A 		229
B 200.7
(-1.8)
A 		357.3
(2.1)
P 		392.8
(3)
P 		150.9
(-3)
A 		242
C 211.1
(-2)
A 		364.1
(2)
P 		403.6
(3)
P 		173.3
(-3)
A 		230
avr 172.6
(-2.3) 		352.2
(2.4) 		373.5
(3) 		146.7
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 400.5
(3)
P 		225.4
(-0.9)
P 		209.1
(-1.3)
A 		270.4
(0.1)
P 		305
(0.9)
A 		130.3
(-3)
A 		270
B 321
(2.4)
P 		242.3
(0.5)
P 		222.5
(0)
P 		343.3
(3)
M 		249.4
(0.7)
A 		101.3
(-3)
A 		242
C 389.1
(3)
P 		287.6
(0.8)
P 		235.5
(-0.3)
P 		319.8
(1.5)
P 		196.8
(-1.1)
P 		109.7
(-3)
A 		279
avr 370.2
(3) 		251.8
(0.2) 		222.4
(-0.5) 		311.2
(1.6) 		250.4
(0.2) 		113.8
(-3) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 38.6
(-1.1)
A 		72.7
(1.9)
P 		84.7
(3)
P 		17
(-3)
A 		68
B 64
(0.2)
A 		88.3
(2.7)
P 		91
(3)
P 		32.2
(-3)
A 		59
C 69.9
(-0.8)
A 		104.7
(1.1)
P 		140.7
(3)
P 		29.2
(-3)
A 		112
avr 57.5
(-0.6) 		88.6
(1.7) 		105.5
(3) 		26.1
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 73.8
(1.2)
P 		80.2
(1.8)
P 		45.5
(-1.6)
A 		68.6
(0.7)
P 		92
(3)
A 		31.7
(-3)
A 		60
B 111.7
(3)
P 		80.7
(0.5)
P 		54
(-1.7)
P 		90.9
(1.3)
M 		101.3
(2.2)
A 		37.8
(-3)
A 		74
C 144.2
(3)
P 		87.8
(-0.1)
P 		59.9
(-1.7)
P 		64.3
(-1.5)
P 		63.7
(-1.5)
P 		36.7
(-3)
A 		108
avr 109.9
(3) 		82.9
(0.8) 		53.1
(-1.6) 		74.6
(0.2) 		85.7
(1.1) 		35.4
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17725
Sequence Type Exemplar sequence
Representative Public ID Y15E3A.1 NCBI
Target Description Y15E3A.1 /REP_DB=WormBase Gene ID /WP=CE27779 /GEN=nhr-91 /TR=Q9U2R6 /GB=CAB60329.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=nuclear hormone receptor nhr-91
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029782(11), NM_001029783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029782 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-91) (nhr-91) mRNA, complete cds. 11/11 None
NM_001029783 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-91) (nhr-91) mRNA, complete cds. 11/11 None
SNAP00000023751 ENSEMBL cdna:SNAP chromosome:CEL140:X:15312555:15314382:1 11/11 None
GENEFINDER00000023760 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15312555:15314382:1 11/11 None
Y15E3A.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:15309291:15314816:1 gene:Y15E3A.1 11/11 None
Y15E3A.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:15309292:15314813:1 gene:Y15E3A.1 11/11 None
Y15E3A.1b ENSEMBL cdna:known chromosome:CEL140:X:15312580:15314708:1 gene:Y15E3A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15309295-15314382(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y15E3A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60329 Hypothetical protein Y15E3A.1a [Caenorhabditis elegans] ref|NP_001024953.1| Nuclear Hormone Receptor family member (nhr-91) [Caenorhabditis elegans] gb|AAQ55497.1| NHR-91A [Caenorhabditis elegans] 0.0
blast AAG15182 nuclear receptor NHR-91 [Caenorhabditis elegans] gb|AAG15181.1| nuclear receptor NHR-91 [Caenorhabditis elegans] 0.0
blast AAG15183 nuclear receptor NHR-91 [Caenorhabditis elegans] 0.0
blast CAI46629 Hypothetical protein Y15E3A.1b [Caenorhabditis elegans] ref|NP_001024954.1| Nuclear Hormone Receptor family member (nhr-91) [Caenorhabditis elegans] gb|AAQ55498.1| NHR-91B [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.2E-29
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.7E-48
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.2E-29
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.2E-29
Sequence
Target Sequence 
>C. ELEGANS:193433_AT
gacacaacgatgggccgagctagtattactatctgctggatactacgcgtgctcggtctt
tactccggactcccccgacacaacagaaatgatagacgaaactgacgagatctcattcac
aaacccacaggtcaaccttcggctacttcaaaatcgattatcactggtgctcggcaaaga
aattccattggaacacgtggcgaaagaagccggtccgcttgtcacccgtttcacgaccct
cctccattcgttctcaaatctcaaggtctctccggaagcgtacgtctgtatcaaagctat
cactcttcttcacctctccgccgactcgacacttgataggagtatcatcgacaaggtcaa
cacgcttcaggatcactttgtcaaaacacttcaaattcatctgcaccagccgggagagga
cgcgcagacgacgagcctcgcacagatacttgactggcttccggatttgcgaaacgcttc
gtcagtgctgcttcattcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACAACGATGGGCCGAGCTAGTA 710 345 1437 Antisense
TTCACAAACCCACAGGTCAACCTTC 72 685 1552 Antisense
ATCGATTATCACTGGTGCTCGGCAA 426 35 1589 Antisense
TCTCCGGAAGCGTACGTCTGTATCA 155 609 1705 Antisense
GTATCAAAGCTATCACTCTTCTTCA 59 455 1724 Antisense
TCCGCCGACTCGACACTTGATAGGA 140 595 1753 Antisense
GTCAACACGCTTCAGGATCACTTTG 635 463 1792 Antisense
TCATCTGCACCAGCCGGGAGAGGAC 210 621 1833 Antisense
GACGACGAGCCTCGCACAGATACTT 573 379 1863 Antisense
AGATACTTGACTGGCTTCCGGATTT 39 65 1880 Antisense
CTTCGTCAGTGCTGCTTCATTCAAA 598 219 1913 Antisense
Sequence Source Affymetrix Proprietary Database