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[193432_at] 7 transmembrane receptor (rhodopsin family)

Description H02I12.3 /REP_DB=WormBase Gene ID /WP=CE16160 /TR=O45601 /GB=CAB07217.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 13      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 678.4
(0.6)
P 		464.9
(-2.5)
P 		427.8
(-3)
P 		851
(3)
P 		423
B 679.7
(-0)
P 		508.7
(-2.1)
P 		439.6
(-3)
P 		924.3
(3)
P 		485
C 749.6
(1.3)
P 		424.1
(-3)
P 		435.1
(-2.9)
P 		875.6
(3)
P 		452
avr 702.6
(0.6) 		465.9
(-2.6) 		434.2
(-3) 		883.6
(3) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 608.9
(3)
P 		583.2
(2.4)
P 		560
(1.9)
P 		402.5
(-1.5)
P 		452.7
(-0.4)
P 		335.5
(-3)
P 		273
B 638.4
(1.8)
P 		694.5
(3)
P 		510.6
(-0.9)
P 		442.7
(-2.3)
P 		411.9
(-3)
P 		431.8
(-2.6)
P 		283
C 457.3
(-0.9)
P 		657.6
(3)
P 		498.4
(-0.1)
P 		420.8
(-1.6)
P 		346.3
(-3)
P 		362.3
(-2.7)
P 		311
avr 568.2
(1.3) 		645.1
(3) 		523
(0.3) 		422
(-2) 		403.6
(-2.4) 		376.5
(-3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 247
(3)
P 		100.9
(-3)
P 		111.8
(-2.6)
P 		124.6
(-2)
P 		146
B 216.8
(3)
P 		125.6
(-1.8)
P 		101.9
(-3)
P 		197
(2)
P 		115
C 248.1
(3)
P 		121.9
(-3)
P 		151.6
(-1.6)
P 		147.6
(-1.8)
P 		126
avr 237.3
(3) 		116.1
(-3) 		121.8
(-2.7) 		156.4
(-1) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 112.3
(-1.5)
P 		207.4
(3)
P 		122
(-1.1)
P 		102.1
(-2)
P 		136.6
(-0.4)
P 		81.7
(-3)
P 		126
B 222.1
(2.5)
P 		231.2
(3)
P 		124
(-2.6)
P 		117.2
(-3)
P 		167.3
(-0.4)
P 		161
(-0.7)
P 		114
C 169.5
(1.4)
P 		200.7
(3)
P 		126.9
(-0.8)
P 		84.6
(-3)
P 		112.1
(-1.6)
P 		121.3
(-1.1)
P 		116
avr 168
(0.6) 		213.1
(3) 		124.3
(-1.8) 		101.3
(-3) 		138.7
(-1) 		121.3
(-1.9) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9161
Sequence Type Exemplar sequence
Representative Public ID H02I12.3 NCBI
Target Description H02I12.3 /REP_DB=WormBase Gene ID /WP=CE16160 /TR=O45601 /GB=CAB07217.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069746 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-89) (tag-89) mRNA, complete cds. 11/11 None
SNAP00000036321 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11394525:11396600:1 11/11 None
GENEFINDER00000036330 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11394525:11396600:1 11/11 None
H02I12.3 ENSEMBL cdna:known chromosome:CEL140:IV:11394525:11396600:1 gene:H02I12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11394530-11396606(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol tag-89
Ensembl H02I12.3
Entrez Gene 178062 Entrez gene
SwissProt O45601 EMBL-EBI
WormBase CE16160 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07217 Hypothetical protein H02I12.3 [Caenorhabditis elegans] ref|NP_502147.1| Temporarily Assigned Gene name family member (tag-89) [Caenorhabditis elegans] 0.0
blast CAE62061 Hypothetical protein CBG06079 [Caenorhabditis briggsae] 1.0E-164
blast CAE60112 Hypothetical protein CBG03650 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502147.1 6 45-67,87-109,166-185,208-230,289-311,326-348
H02I12.3 6 45-67,87-109,166-185,208-230,289-311,326-348
SNAP00000036321 6 45-67,87-109,166-185,208-230,289-311,326-348
GENEFINDER00000036330 6 45-67,87-109,166-185,208-230,289-311,326-348
Sequence
Target Sequence 
>C. ELEGANS:193432_AT
gatggtctgcgacacgcgaattgtagtttcaacttctacagacgattcccgttccgaatc
actattttcctgatcttcatgcttccattaatctcaacattgattatttatggatgtatt
cttgtgaaacttttaaaagccaaagtggaatttgaatcttactgtactgatcgcaaaatt
gatatcagtcagaacagtcagaatagtcaaaatggccaaaatggaagcaaaaatagtaag
acaccagcaagccgaagctacagtacccgatctactaatgtatattcaaagttgaaatta
gtttggacaactcttctgattgtgtctacattctcattgtcatggggactttgtgttctt
tattttgtgattgtttgtgaagaaggatgtatgctgatctacaatgaaaatattggactt
tatctttccctatttctaagttcatctgtcaatattttagtaatgctcaaacttgcatca
aatccgtttatctacacacttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCTGCGACACGCGAATTGTA 49 409 577 Antisense
TCAACTTCTACAGACGATTCCCGTT 652 629 605 Antisense
ACGATTCCCGTTCCGAATCACTATT 651 91 618 Antisense
GAATCACTATTTTCCTGATCTTCAT 631 327 632 Antisense
GATCTTCATGCTTCCATTAATCTCA 70 421 648 Antisense
GACACCAGCAAGCCGAAGCTACAGT 659 365 816 Antisense
GAAGCTACAGTACCCGATCTACTAA 160 343 830 Antisense
AACTCTTCTGATTGTGTCTACATTC 333 141 885 Antisense
GTCATGGGGACTTTGTGTTCTTTAT 329 465 915 Antisense
TGGACTTTATCTTTCCCTATTTCTA 454 547 990 Antisense
AAATCCGTTTATCTACACACTTCGT 478 115 1056 Antisense
Sequence Source Affymetrix Proprietary Database