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[193431_at] Cys(3)His finger protein (D. melanogaster)

Description C34D10.2 /REP_DB=WormBase Gene ID /WP=CE27819 /TR=Q18437 /GB=AAA68423.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Cys(3)His finger protein (D. melanogaster)
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 05      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 04      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 386.7
(3)
P 		194.8
(-3)
A 		261.5
(-0.9)
A 		287.6
(-0.1)
P 		192
B 257.7
(-0.5)
P 		239.4
(-3)
A 		262.3
(0.1)
A 		283.6
(3)
P 		44
C 351
(3)
P 		224.7
(-2.2)
P 		204.3
(-3)
P 		247.1
(-1.2)
P 		147
avr 331.8
(3) 		219.6
(-3) 		242.7
(-1.8) 		272.8
(-0.2) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 446
(3)
P 		317.2
(-0.5)
P 		272.8
(-1.8)
P 		308
(-0.8)
P 		372
(1)
P 		228.3
(-3)
P 		218
B 382.3
(2.8)
P 		391.1
(3)
P 		239.7
(-1.2)
P 		366
(2.3)
P 		354.1
(2)
P 		175.7
(-3)
P 		215
C 498.5
(3)
P 		372.1
(0.6)
P 		407.4
(1.2)
P 		238
(-2)
P 		370.1
(0.5)
P 		188.3
(-3)
P 		310
avr 442.3
(3) 		360.1
(1) 		306.6
(-0.3) 		304
(-0.4) 		365.4
(1.1) 		197.4
(-3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 140.8
(3)
P 		42.3
(-3)
A 		68.4
(-1.4)
A 		42.1
(-3)
P 		99
B 82.2
(3)
P 		59.1
(-3)
A 		60.8
(-2.6)
A 		60.4
(-2.7)
P 		23
C 116.2
(3)
P 		64.6
(-1.2)
P 		71.2
(-0.6)
P 		41.7
(-3)
P 		75
avr 113.1
(3) 		55.3
(-2.3) 		66.8
(-1.3) 		48.1
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 82.2
(-0.2)
P 		112.8
(3)
P 		59.4
(-2.6)
P 		78.1
(-0.6)
P 		112.3
(2.9)
P 		55.6
(-3)
P 		57
B 133
(2.2)
P 		130.2
(2)
P 		58.2
(-3)
P 		96.9
(-0.3)
P 		143.9
(3)
P 		65.5
(-2.5)
P 		86
C 184.8
(3)
P 		113.6
(-0.1)
P 		103.7
(-0.6)
P 		47.9
(-3)
P 		119.8
(0.2)
P 		63
(-2.3)
P 		137
avr 133.3
(3) 		118.9
(1.8) 		73.8
(-2) 		74.3
(-1.9) 		125.3
(2.3) 		61.4
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17171
Sequence Type Exemplar sequence
Representative Public ID C34D10.2 NCBI
Target Description C34D10.2 /REP_DB=WormBase Gene ID /WP=CE27819 /TR=Q18437 /GB=AAA68423.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Cys(3)His finger protein (D. melanogaster)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076949(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076949 NCBI Caenorhabditis elegans C34D10.2 (C34D10.2) mRNA, complete cds. 10/11 None
GENEFINDER00000010189 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8014926:8025362:1 10/11 None
SNAP00000010184 ENSEMBL cdna:SNAP chromosome:CEL140:X:8022735:8025362:1 10/11 None
C34D10.2 ENSEMBL cdna:known chromosome:CEL140:X:8017961:8027246:1 gene:C34D10.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8020222-8026285(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cys(3)His finger protein (D. melanogaster)
Ensembl C34D10.2
Entrez Gene 181059 Entrez gene
SwissProt Q18437 EMBL-EBI
WormBase CE37615 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68423 Hypothetical protein C34D10.2 [Caenorhabditis elegans] ref|NP_509350.2| C34D10.2 [Caenorhabditis elegans] 0.0
blast CAE70335 Hypothetical protein CBG16872 [Caenorhabditis briggsae] 0.0
blast XP_693777 PREDICTED: similar to MGC82388 protein [Danio rerio] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.8E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010189 1 132-154
Sequence
Target Sequence 
>C. ELEGANS:193431_AT
tttgatccaaatgtgttctcccaggattatgctcaagatgactacaacgactacatgaag
cagcccaaaaatgaggatttcaacagtttgagcgacaagtgtcagtatcttgaagagtca
ctgaaacataccagacaacaagccgacatgtggagaatgcgttttgaaggagaatttatg
gaaaagaacagacttctcgccgagcgatcaaatttgctggggcagattgaacaaatgaag
caccagatgccacaatctccattcatgccaccagttcagatgggatccccgctttcaata
agtttgcctcaggacaattatgacggaggaattcgcccatcagctagtcttcaacacagt
ccaccttacaatatttttgggaacgactgtgaaactggtgcaccagcttgtgcccgttgt
ggacgtgatcgttcccgatctggatttgacaatcaaagttcttgccccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGATCCAAATGTGTTCTCCCAGG 463 667 1576 Antisense
CAGACTTCTCGCCGAGCGATCAAAT 574 205 1764 Antisense
CAGATGCCACAATCTCCATTCATGC 567 205 1819 Antisense
ACCAGTTCAGATGGGATCCCCGCTT 655 85 1845 Antisense
GATCCCCGCTTTCAATAAGTTTGCC 27 417 1859 Antisense
TATGACGGAGGAATTCGCCCATCAG 363 651 1894 Antisense
TCAGCTAGTCTTCAACACAGTCCAC 466 623 1915 Antisense
AACACAGTCCACCTTACAATATTTT 183 133 1928 Antisense
GAAACTGGTGCACCAGCTTGTGCCC 638 357 1966 Antisense
GTTGTGGACGTGATCGTTCCCGATC 534 433 1991 Antisense
TTGACAATCAAAGTTCTTGCCCCCT 617 703 2021 Antisense
Sequence Source Affymetrix Proprietary Database