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[193430_at] HSP-1 heat shock 70kd protein A

Description F26D10.3 /REP_DB=WormBase Gene ID /WP=CE09682 /GEN=hsp-70 /TR=Q93601 /GB=CAB02319.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=HSP-1 heat shock 70kd protein A
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 17      6grp_total > 26      4grp_total > 16      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17499
1 2 3 4 range
A 13381.9
(-3)
P 		18451.9
(-1.2)
P 		20003
(-0.6)
P 		29897.5
(3)
P 		16516
B 12545.5
(-3)
P 		16415.4
(-1)
P 		18339
(-0.1)
P 		24450.2
(3)
P 		11905
C 12398.3
(-3)
P 		16609.2
(-1.2)
P 		16621.1
(-1.2)
P 		26366.6
(3)
P 		13968
avr 12775.2
(-3) 		17158.8
(-1.1) 		18321
(-0.6) 		26904.8
(3) 		14130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7938
1 2 3 4 5 6 range
A 14004.9
(3)
P 		13500.9
(2.3)
P 		10879.2
(-1.2)
P 		10126.4
(-2.2)
P 		9494.5
(-3)
P 		12854.3
(1.5)
P 		4510
B 13783.9
(3)
P 		13300.1
(2.4)
P 		10136.1
(-1.8)
P 		9600.6
(-2.5)
P 		9249.3
(-3)
P 		10862.9
(-0.9)
P 		4535
C 13880.2
(3)
P 		12909.1
(2.3)
P 		12905.9
(2.3)
P 		6067.4
(-3)
P 		12323.6
(1.8)
P 		9168.2
(-0.6)
P 		7813
avr 13889.7
(3) 		13236.7
(2.3) 		11307.1
(0.1) 		8598.1
(-3) 		10355.8
(-1) 		10961.8
(-0.3) 		5292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1792
1 2 3 4 range
A 4872.3
(1.3)
P 		4005.4
(-3)
P 		5229.2
(3)
P 		4376.4
(-1.2)
P 		1224
B 4000.7
(-3)
P 		4054.2
(-2.7)
P 		4249.6
(-1.8)
P 		5210.3
(3)
P 		1210
C 4104.2
(-3)
P 		4775.2
(-0.6)
P 		5793
(3)
P 		4445.8
(-1.8)
P 		1689
avr 4325.7
(-2.6) 		4278.3
(-3) 		5090.6
(3) 		4677.5
(-0.1) 		812

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3925
1 2 3 4 5 6 range
A 2581.7
(-2.5)
P 		4801.6
(3)
P 		2369.3
(-3)
P 		2568.3
(-2.5)
P 		2865
(-1.8)
P 		3129.6
(-1.1)
P 		2432
B 4796.1
(3)
P 		4427.1
(2.1)
P 		2461.4
(-3)
P 		2542.9
(-2.8)
P 		3757.9
(0.3)
P 		4050.7
(1.1)
P 		2335
C 5144.8
(3)
P 		3939
(1.2)
P 		3284.8
(0.2)
P 		1220.2
(-3)
P 		3987.7
(1.2)
P 		3069.1
(-0.2)
P 		3925
avr 4174.2
(2.4) 		4389.2
(3) 		2705.2
(-1.4) 		2110.5
(-3) 		3536.9
(0.8) 		3416.5
(0.4) 		2279
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9780
Sequence Type Exemplar sequence
Representative Public ID F26D10.3 NCBI
Target Description F26D10.3 /REP_DB=WormBase Gene ID /WP=CE09682 /GEN=hsp-70 /TR=Q93601 /GB=CAB02319.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=HSP-1 heat shock 70kd protein A
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070667 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-1) (hsp-1) mRNA, complete cds. 11/11 None
SNAP00000032156 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17280263:17281140:1 11/11 None
GENEFINDER00000032169 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17280394:17281140:1 11/11 None
F26D10.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:17278912:17281290:1 gene:F26D10.3 11/11 None
F26D10.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:17278912:17281284:1 gene:F26D10.3 11/11 None
F26D10.3.4 ENSEMBL cdna:known chromosome:CEL140:IV:17278914:17281529:1 gene:F26D10.3 11/11 None
F26D10.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:17278914:17281290:1 gene:F26D10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17278924-17281146(+) 100.0 100.0
Public Domain and Genome References
Gene Title HSP-1 heat shock 70kd protein A
Gene Symbol hsp-1
Ensembl F26D10.3
Entrez Gene 178507 Entrez gene
SwissProt P09446 EMBL-EBI
WormBase CE09682 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13284_AT heat shock protein 70, putative / HSP70, putative at
ATH1-121501:256245_AT heat shock protein 70, putative / HSP70, putative at
CANINE:1604124_AT similar to Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) cfa
CANINE:1604131_S_AT similar to Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) cfa
CANINE:1596390_S_AT similar to Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) cfa
CANINE_2:CFA.273.6.S1_S_AT similar to Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) cfa
DROSOPHILA_2:1630637_S_AT Heat shock protein cognate 4 dm
DROSGENOME1:143194_AT Heat shock protein cognate 4 dm
HG-U133_PLUS_2:210338_S_AT heat shock 70kDa protein 8 hs
HG-U133A:210338_S_AT heat shock 70kDa protein 8 hs
HG-FOCUS:210338_S_AT heat shock 70kDa protein 8 hs
HG-U133A_2:210338_S_AT heat shock 70kDa protein 8 hs
HG-U95AV2:40637_AT heat shock 70kDa protein 8 hs
HG-U133A:208687_X_AT heat shock 70kDa protein 8 hs
HG-U133_PLUS_2:208687_X_AT heat shock 70kDa protein 8 hs
HG-U133A_2:208687_X_AT heat shock 70kDa protein 8 hs
HG-U133_PLUS_2:224187_X_AT heat shock 70kDa protein 8 hs
HG-U133B:224187_X_AT heat shock 70kDa protein 8 hs
HU35KSUBD:RC_AA598737_S_AT heat shock 70kDa protein 8 hs
U133_X3P:G11526572_3P_A_AT heat shock 70kDa protein 8 hs
U133_X3P:HS.180414.3.A1_3P_A_AT heat shock 70kDa protein 8 hs
HG-U133A_2:221891_X_AT heat shock 70kDa protein 8 hs
HG-U133_PLUS_2:221891_X_AT heat shock 70kDa protein 8 hs
HG-U133A:221891_X_AT heat shock 70kDa protein 8 hs
HG-U95AV2:33820_G_AT heat shock 70kDa protein 8 hs
HG-U95B:44833_S_AT heat shock 70kDa protein 8 hs
HG-U95E:73372_R_AT heat shock 70kDa protein 8 hs
HG-U95AV2:39464_AT Heat shock 70kDa protein 8 hs
MOUSE430_2:1420623_X_AT heat shock protein 8 mm
MOE430A:1420623_X_AT heat shock protein 8 mm
MOUSE430A_2:1420623_X_AT heat shock protein 8 mm
MOUSE430A_2:1431182_AT heat shock protein 8 mm
MOUSE430_2:1431182_AT heat shock protein 8 mm
MOE430A:1431182_AT heat shock protein 8 mm
MU11KSUBA:U73744_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.7250.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.16623.0_I_AT heat shock protein 8 mm
MU11KSUBB:MSA.16623.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.41597.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.34101.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.31957.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.28973.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.27779.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.29664.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.23647.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.22866.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.11354.0_F_AT heat shock protein 8 mm
MU11KSUBB:MSA.778.0_F_AT heat shock protein 8 mm
MG-U74AV2:96564_AT heat shock protein 8 mm
MOE430A:1420622_A_AT heat shock protein 8 mm
MOUSE430A_2:1420622_A_AT heat shock protein 8 mm
MOUSE430_2:1420622_A_AT heat shock protein 8 mm
MOE430A:1455789_X_AT heat shock protein 8 mm
MOUSE430A_2:1455789_X_AT heat shock protein 8 mm
MOUSE430_2:1455789_X_AT heat shock protein 8 mm
MU11KSUBB:MSA.36918.0_F_AT Heat shock protein 8, mRNA (cDNA clone MGC:11684 IMAGE:3711399) mm
MU19KSUBA:TC18775_AT Heat shock protein 8, mRNA (cDNA clone MGC:11684 IMAGE:3711399) mm
MU19KSUBC:TC35833_F_AT Heat shock protein 8, mRNA (cDNA clone MGC:11684 IMAGE:3711399) mm
MU19KSUBC:TC35833_R_AT Heat shock protein 8, mRNA (cDNA clone MGC:11684 IMAGE:3711399) mm
MU19KSUBC:TC35836_F_AT Heat shock protein 8, mRNA (cDNA clone MGC:11684 IMAGE:3711399) mm
RG-U34A:RC_AI234604_S_AT heat shock protein 8 rn
RT-U34:RC_AI234604_S_AT heat shock protein 8 rn
RT-U34:M11942_S_AT heat shock protein 8 rn
RG-U34A:M11942_S_AT heat shock protein 8 rn
RAE230A:1398240_AT heat shock protein 8 rn
RAT230_2:1398240_AT heat shock protein 8 rn
YEAST_2:1770202_AT Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the HSP70 family; cytoplasmic protein that concentrates in nuclei upon starvation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9408 response to heat inferred from direct assay QuickGO AmiGO
9408 response to heat inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02319 Hypothetical protein F26D10.3 [Caenorhabditis elegans] ref|NP_503068.1| Heat Shock Protein family member (hsp-1) [Caenorhabditis elegans] sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A 0.0
blast CAE57488 Hypothetical protein CBG00457 [Caenorhabditis briggsae] 0.0
blast AAA28078 heat shock protein 70A 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.0E-126
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.0E-126
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 6.0E-113
Sequence
Target Sequence 
>C. ELEGANS:193430_AT
gaacgtgccatgaccaaggacaacaacttgctcggaaagttcgagctctccggaatccca
ccagcaccacgcggagtcccacaaatcgaagtcactttcgatattgacgccaacggaatc
ttgaacgtctctgccactgacaagtccaccggaaagcaaaacaagatcaccatcaccaac
gacaagggacgtctttccaaggatgacattgaacgcatggtcaacgaagctgagaaatac
aaggctgacgatgaggcccaaaaggaccgtattggagccaagaacggactcgagtcatac
gccttcaaccttaagcagaccattgaggacgagaagctcaaggataagatcagcccagaa
gacaagaagaagatcgaggacaagtgcgacgagatcttgaagtggctcgacagcaaccag
accgcagagaaggaggagttcgagcaccaacagaaggatttggaaggattggccaaccca
atcatttccaagctttaccagagtgccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTGCCATGACCAAGGACAACA 216 349 1351 Antisense
GGAGTCCCACAAATCGAAGTCACTT 12 517 1423 Antisense
TCACTTTCGATATTGACGCCAACGG 178 627 1442 Antisense
AACGGAATCTTGAACGTCTCTGCCA 704 143 1462 Antisense
GCCACTGACAAGTCCACCGGAAAGC 540 279 1483 Antisense
GACAAGGGACGTCTTTCCAAGGATG 220 363 1531 Antisense
GAACGGACTCGAGTCATACGCCTTC 141 349 1632 Antisense
ATACGCCTTCAACCTTAAGCAGACC 556 23 1647 Antisense
TGAAGTGGCTCGACAGCAACCAGAC 480 575 1748 Antisense
TGGCCAACCCAATCATTTCCAAGCT 46 545 1820 Antisense
TTTCCAAGCTTTACCAGAGTGCCGG 424 667 1835 Antisense
Sequence Source Affymetrix Proprietary Database