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[193419_at]

Description F35B12.1 /REP_DB=WormBase Gene ID /WP=CE05800 /TR=Q20009 /GB=CAA98462.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 45      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 67      6grp_total > 40      4grp_total > 15      6grp_highest_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1061
1 2 3 4 range
A 2773
(3)
P 		1860
(-3)
P 		2125.2
(-1.3)
P 		2359.2
(0.3)
P 		913
B 2562.2
(2.2)
P 		2067.7
(-1.1)
P 		1782.4
(-3)
P 		2675.1
(3)
P 		893
C 2301.2
(1.4)
P 		1711.6
(-3)
P 		1904.2
(-1.6)
P 		2517.7
(3)
P 		806
avr 2545.5
(3) 		1879.8
(-3) 		1937.3
(-2.5) 		2517.3
(2.7) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1140
1 2 3 4 5 6 range
A 2061.7
(1.9)
P 		2188.5
(3)
P 		1526.4
(-3)
P 		1980.9
(1.1)
P 		1558.4
(-2.7)
P 		1811
(-0.4)
P 		662
B 1698.7
(0.9)
P 		1794.3
(1.9)
P 		1442
(-1.9)
P 		1898.4
(3)
P 		1334.6
(-3)
P 		1539.8
(-0.8)
P 		564
C 2067.3
(1.5)
P 		2232.1
(2.4)
P 		2343.5
(3)
P 		1870.3
(0.5)
P 		1203.7
(-3)
P 		1531.5
(-1.3)
P 		1140
avr 1942.6
(1.9) 		2071.6
(3) 		1770.6
(0.4) 		1916.5
(1.7) 		1365.6
(-3) 		1627.4
(-0.8) 		706
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 664
1 2 3 4 range
A 1009.6
(3)
P 		403.8
(-2.5)
P 		555.6
(-1.1)
P 		345.3
(-3)
P 		664
B 817.1
(3)
P 		510.7
(-1.5)
P 		413
(-3)
P 		570.1
(-0.7)
P 		404
C 761.8
(3)
P 		492.1
(-1.8)
P 		663.7
(1.3)
P 		424.5
(-3)
P 		337
avr 862.8
(3) 		468.9
(-2.7) 		544.1
(-1.6) 		446.6
(-3) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 380.1
(-2.4)
P 		778.4
(3)
P 		332.4
(-3)
P 		502.4
(-0.7)
P 		470.3
(-1.1)
P 		440.9
(-1.5)
P 		446
B 591.1
(2.9)
P 		597.2
(3)
P 		350.2
(-3)
P 		502.8
(0.7)
P 		542.2
(1.7)
P 		574.2
(2.4)
P 		247
C 766.2
(3)
P 		681.1
(1.7)
P 		596.5
(0.4)
P 		376.1
(-3)
P 		389.5
(-2.8)
P 		512.7
(-0.9)
P 		390
avr 579.1
(0.5) 		685.6
(3) 		426.4
(-3) 		460.4
(-2.2) 		467.3
(-2.1) 		509.3
(-1.1) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13597
Sequence Type Exemplar sequence
Representative Public ID F35B12.1 NCBI
Target Description F35B12.1 /REP_DB=WormBase Gene ID /WP=CE05800 /TR=Q20009 /GB=CAA98462.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073539 NCBI Caenorhabditis elegans F35B12.9 (F35B12.9) mRNA, complete cds. 11/11 None
SNAP00000002147 ENSEMBL cdna:SNAP chromosome:CEL140:V:11603783:11604867:1 11/11 None
GENEFINDER00000002166 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11603783:11604867:1 11/11 None
F35B12.9 ENSEMBL cdna:known chromosome:CEL140:V:11603708:11604938:1 gene:F35B12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11601748-11604867(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35B12.9
Entrez Gene 179591 Entrez gene
SwissProt Q8I4J8 EMBL-EBI
WormBase CE31931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54140 Hypothetical protein F35B12.9 [Caenorhabditis elegans] ref|NP_505940.2| F35B12.9 [Caenorhabditis elegans] 1.0E-120
blast CAD54140 Hypothetical protein F35B12.9 [Caenorhabditis elegans] ref|NP_505940.2| F35B12.9 [Caenorhabditis elegans] 1.0E-119
blast CAE75332 Hypothetical protein CBG23310 [Caenorhabditis briggsae] 1.0E-61
blast CAE75332 Hypothetical protein CBG23310 [Caenorhabditis briggsae] 3.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505940.2 1 265-287
F35B12.9 1 265-287
SNAP00000002147 1 258-280
GENEFINDER00000002166 1 265-287
Sequence
Target Sequence 
>C. ELEGANS:193419_AT
gatccagaattcgcaagaggcccaaaaccaaagacaatgaaacccaaaatggatgatgct
gaagagaaagttttcctgactgctcttggacaaatatatttggataaactcgacgaggaa
caacgcacaaatgagagatatccaggaccacttggaccaatcggaccaatgggaccacca
cctccattggattatgattacttgtttgttccagtcgaggctcctagcaaaatggagtct
aataataatggaaacaacaatgttcacgtcaactcaaatgttcttcacgtccctgaaaag
gacaagaagaatattgaaaaacacgaggacatgccaccaataattccatcttatcatgac
tcagaaccatcttctacatcccaattcctttatttcaacttcaatacattcgacattctt
gtcctttctgttctgattgctgctttcgttttcgccaccaagaaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAGAATTCGCAAGAGGCCCAA 621 415 1243 Antisense
AGTTTTCCTGACTGCTCTTGGACAA 379 59 1311 Antisense
ATGATTACTTGTTTGTTCCAGTCGA 53 47 1436 Antisense
TTCCAGTCGAGGCTCCTAGCAAAAT 16 701 1451 Antisense
CAACTCAAATGTTCTTCACGTCCCT 52 189 1512 Antisense
AAAACACGAGGACATGCCACCAATA 325 129 1560 Antisense
ATGCCACCAATAATTCCATCTTATC 320 41 1573 Antisense
TCATGACTCAGAACCATCTTCTACA 162 623 1596 Antisense
TCTACATCCCAATTCCTTTATTTCA 89 615 1615 Antisense
TGTTCTGATTGCTGCTTTCGTTTTC 20 563 1671 Antisense
TTTCGTTTTCGCCACCAAGAAAGCA 444 667 1686 Antisense
Sequence Source Affymetrix Proprietary Database