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[193417_at] 7TM chemoreceptor, srw family

Description ZK1037.9 /REP_DB=WormBase Gene ID /WP=CE16761 /TR=O45991 /GB=CAB03508.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 43      4grp_total > 10      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 3.1
(-3)
A 		18.7
(0)
A 		26.1
(1.4)
A 		34.2
(3)
A 		31
B 5.5
(-3)
A 		20.5
(1.8)
A 		6.3
(-2.7)
A 		24.3
(3)
A 		19
C 21.5
(-1.1)
A 		5.3
(-2.7)
A 		1.7
(-3)
A 		65.8
(3)
A 		64
avr 10
(-3) 		14.8
(-2.1) 		11.4
(-2.7) 		41.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 19.2
(-0)
A 		2.7
(-3)
A 		22.5
(0.6)
A 		36
(3)
A 		9.2
(-1.8)
A 		29.2
(1.8)
A 		33
B 10.3
(3)
A 		7.3
(0.6)
A 		5.6
(-0.8)
A 		3.5
(-2.4)
A 		2.8
(-3)
A 		3.1
(-2.8)
A 		8
C 49.2
(2.2)
A 		28.8
(-0.1)
A 		56.4
(3)
A 		2.7
(-3)
A 		6.4
(-2.6)
A 		6.1
(-2.6)
A 		54
avr 26.2
(2.5) 		12.9
(-1.2) 		28.2
(3) 		14.1
(-0.8) 		6.1
(-3) 		12.8
(-1.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-3)
A 		4.1
(0.2)
A 		6.8
(3)
A 		5
(1.1)
A 		6
B 1.7
(-2.7)
A 		5.1
(2.8)
A 		1.5
(-3)
A 		5.2
(3)
A 		4
C 7.1
(0.7)
A 		1.5
(-2.5)
A 		0.6
(-3)
A 		11.1
(3)
A 		11
avr 3.3
(-2.6) 		3.6
(-2.1) 		3
(-3) 		7.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.5
(-1.1)
A 		1
(-3)
A 		4.9
(-0.1)
A 		9.1
(3)
A 		2.8
(-1.7)
A 		7.1
(1.5)
A 		8
B 3.6
(3)
A 		2.4
(0.3)
A 		1.4
(-1.9)
A 		0.9
(-3)
A 		1.1
(-2.6)
A 		1.1
(-2.6)
A 		3
C 18.2
(3)
A 		8.8
(-0.2)
A 		14.3
(1.7)
A 		0.6
(-3)
A 		2.1
(-2.5)
A 		2
(-2.5)
A 		18
avr 8.4
(3) 		4.1
(-1) 		6.9
(1.6) 		3.5
(-1.6) 		2
(-3) 		3.4
(-1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13695
Sequence Type Exemplar sequence
Representative Public ID ZK1037.9 NCBI
Target Description ZK1037.9 /REP_DB=WormBase Gene ID /WP=CE16761 /TR=O45991 /GB=CAB03508.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074401 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-113) (srw-113) mRNA, complete cds. 11/11 None
ZK1037.9 ENSEMBL cdna:known chromosome:CEL140:V:15335737:15337157:1 gene:ZK1037.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019042 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019046 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15335736-15337157(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-113
Ensembl ZK1037.9
Entrez Gene 191503 Entrez gene
SwissProt O45991 EMBL-EBI
WormBase CE16761 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03508 Hypothetical protein ZK1037.9 [Caenorhabditis elegans] ref|NP_506802.1| Serpentine Receptor, class W family member (srw-113) [Caenorhabditis elegans] 0.0
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 6.0E-67
blast AAG24167 Serpentine receptor, class w protein 136 [Caenorhabditis elegans] ref|NP_503821.2| Serpentine Receptor, class W family member (srw-136) [Caenorhabditis elegans] 2.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506802.1 7 35-57,69-91,125-144,157-175,213-235,262-284,299-321
ZK1037.9 7 35-57,69-91,125-144,157-175,213-235,262-284,299-321
Sequence
Target Sequence 
>C. ELEGANS:193417_AT
attcgagccctggtgattcgttacccaatgagctcgagaattgagaagctcacaactccc
aaagttgcattcattataatttccgctgtggttattattagcattccgttctctcttcta
aattataatgatattcaattcatggagtatatcgccacgacaaaatgttttccaaatggc
actatgaaaattctaatggtttttgggagaaaagtcgctacatacaatgccattacggcg
atcgtgacaaatgacattccttgtgttttattccctatcttatcactgcttcttgtaata
gaaattcgaaaagctgacaaaaatcaaaaacgattaacggctccaactaacgctcaggat
tttcaacgaatcactagattggtcctctataacaccctgattttcttcgccaccctactt
cctcttggtattacacgtggcttactatatttcccgcgtggacttgtgtggagcgtagct
cgagaaattgaaagcatagctgccacaattctaactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGAGCCCTGGTGATTCGTTACC 356 7 418 Antisense
GATTCGTTACCCAATGAGCTCGAGA 467 431 432 Antisense
TATTATTAGCATTCCGTTCTCTCTT 459 663 510 Antisense
GACATTCCTTGTGTTTTATTCCCTA 95 371 670 Antisense
CTATCTTATCACTGCTTCTTGTAAT 141 225 692 Antisense
GGCTCCAACTAACGCTCAGGATTTT 694 535 756 Antisense
ATTGGTCCTCTATAACACCCTGATT 274 3 795 Antisense
CCTACTTCCTCTTGGTATTACACGT 696 267 831 Antisense
CACGTGGCTTACTATATTTCCCGCG 315 199 851 Antisense
TTTCCCGCGTGGACTTGTGTGGAGC 132 667 867 Antisense
GCATAGCTGCCACAATTCTAACTGT 348 307 911 Antisense
Sequence Source Affymetrix Proprietary Database