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[193416_s_at] 7 transmembrane receptor (rhodopsin family)

Description Y54E2A.1 /REP_DB=WormBase Gene ID /WP=CE24454 /TR=O62059 /GB=CAA21687.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 02      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 151.2
(0.1)
M 		80.7
(-2.4)
A 		65.2
(-3)
A 		232.4
(3)
P 		167
B 168.7
(2)
M 		95.3
(-1)
A 		47.8
(-3)
A 		192.9
(3)
A 		145
C 181.8
(3)
A 		64.3
(-2.4)
A 		52.2
(-3)
A 		169.7
(2.4)
A 		130
avr 167.2
(1.7) 		80.1
(-2) 		55.1
(-3) 		198.3
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 60.5
(-2.3)
A 		153.5
(3)
A 		48
(-3)
A 		57.8
(-2.4)
A 		96.8
(-0.2)
A 		57.3
(-2.5)
A 		106
B 112.9
(-0.1)
A 		170.3
(3)
P 		91
(-1.3)
A 		69.2
(-2.5)
A 		59.2
(-3)
A 		62.8
(-2.8)
A 		111
C 135.3
(2.2)
A 		148.7
(3)
A 		55.9
(-2.5)
A 		69
(-1.8)
A 		82.3
(-1)
P 		48.2
(-3)
A 		101
avr 102.9
(-0.2) 		157.5
(3) 		65
(-2.5) 		65.3
(-2.5) 		79.4
(-1.6) 		56.1
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 55.1
(3)
M 		17.5
(-2.9)
A 		17.1
(-3)
A 		34
(-0.3)
P 		38
B 53.8
(3)
M 		23.5
(-1.3)
A 		11.1
(-3)
A 		41.1
(1.2)
A 		43
C 60.2
(3)
A 		18.5
(-3)
A 		18.2
(-3)
A 		28.6
(-1.5)
A 		42
avr 56.4
(3) 		19.8
(-2.4) 		15.5
(-3) 		34.6
(-0.2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.1
(-2.9)
A 		54.6
(3)
A 		10.5
(-3)
A 		14.7
(-2.4)
A 		29.2
(-0.5)
A 		13.9
(-2.5)
A 		44
B 39.3
(0.3)
A 		56.7
(3)
P 		22.1
(-2.4)
A 		18.3
(-3)
A 		24
(-2.1)
A 		23.4
(-2.2)
A 		38
C 50.2
(3)
A 		45.4
(2.2)
A 		14.2
(-3)
A 		13.9
(-3)
A 		26.6
(-0.9)
P 		16.1
(-2.6)
A 		36
avr 33.5
(-0.1) 		52.2
(3) 		15.6
(-3) 		15.6
(-3) 		26.6
(-1.2) 		17.8
(-2.6) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193416_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3810
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.1 NCBI
Target Description Y54E2A.1 /REP_DB=WormBase Gene ID /WP=CE24454 /TR=O62059 /GB=CAA21687.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064656(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064656 NCBI Caenorhabditis elegans Y54E2A.1 (Y54E2A.1) mRNA, complete cds. 10/11 None
SNAP00000033578 ENSEMBL cdna:SNAP chromosome:CEL140:II:14734401:14736210:-1 10/11 None
GENEFINDER00000033582 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14734401:14737973:-1 10/11 None
Y54E2A.1 ENSEMBL cdna:known chromosome:CEL140:II:14734317:14739133:-1 gene:Y54E2A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14734397-14739124(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl Y54E2A.1
Entrez Gene 175131 Entrez gene
SwissProt O62059 EMBL-EBI
WormBase CE31259 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1000.1.S1_AT similar to Galanin receptor type 1 (GAL1-R) (GALR1) cfa
CANINE_2:CFAAFFX.1000.1.S1_S_AT similar to Galanin receptor type 1 (GAL1-R) (GALR1) cfa
CANINE_2:CFAAFFX.999.1.S1_AT similar to Galanin receptor type 1 (GAL1-R) (GALR1) cfa
HG-U133_PLUS_2:220821_AT galanin receptor 1 hs
HG-U133A:220821_AT galanin receptor 1 hs
HG-FOCUS:220821_AT galanin receptor 1 hs
HG-U133A_2:220821_AT galanin receptor 1 hs
U133_X3P:G6031165_3P_AT galanin receptor 1 hs
MOUSE430A_2:1427704_A_AT galanin receptor 1 mm
MOUSE430_2:1427704_A_AT galanin receptor 1 mm
MOE430A:1427704_A_AT galanin receptor 1 mm
MOUSE430A_2:1450568_AT galanin receptor 1 mm
MOE430A:1450568_AT galanin receptor 1 mm
MOUSE430_2:1450568_AT galanin receptor 1 mm
MU11KSUBA:U90657_AT galanin receptor 1 mm
MG-U74AV2:99837_AT galanin receptor 1 mm
MOUSE430_2:1441329_AT Galanin receptor 1 (Galr1), mRNA mm
MOE430B:1441329_AT Galanin receptor 1 (Galr1), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4983 neuropeptide Y receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21687 Hypothetical protein Y54E2A.1 [Caenorhabditis elegans] emb|CAB03866.3| Hypothetical protein Y54E2A.1 [Caenorhabditis elegans] ref|NP_497057.2| Y54E2A.1 [Caenorhabditis elegans] 0.0
blast CAE60620 Hypothetical protein CBG04262 [Caenorhabditis briggsae] 0.0
blast CAA21687 Hypothetical protein Y54E2A.1 [Caenorhabditis elegans] emb|CAB03866.3| Hypothetical protein Y54E2A.1 [Caenorhabditis elegans] ref|NP_497057.2| Y54E2A.1 [Caenorhabditis elegans] 1.0E-138
blast CAE60620 Hypothetical protein CBG04262 [Caenorhabditis briggsae] 1.0E-130
blast CAG12842 unnamed protein product [Tetraodon nigroviridis] 6.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.4E-56
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.3E-12
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.5E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497057.2 6 75-97,109-131,151-173,192-209,246-268,342-361
Y54E2A.1 6 75-97,109-131,151-173,192-209,246-268,342-361
GENEFINDER00000033582 5 17-39,59-81,100-117,154-176,250-269
Sequence
Target Sequence 
>C. ELEGANS:193416_S_AT
gaaatgcgctctcgtatgggatcgtgctcttcggcgagcatgatgtcgacccgcaaccag
caccgaatctacgggtccagcttcaacacactcacagtgcccggtcgctccatgatcact
ccgaacatgtcacgcgacgtctcacagttgtcattgtgcaggccgacgtcgcaaatgtcg
ttctgccgaccgaagagtccaatggccggagactctccgtcgactttcatgaggttcgtg
agatctgtggacgcttcttcagcaaacatcgtcctagatcgccaaccgacgtgtcccatg
attccggaagaccacgtagccccacggatctttcgcagtcgacaaagccttcgcgacgat
cctcctctataagaccccgtagcccaacatcgacatctcaaatgtctaccatagtccgat
cgagaagtcctacaggcgcatcggacacctcttcattgttcccatcaagaacaagaagtc
caactctccaatcaaacacatctggtcaatccatggaacgaaccacggaccgactgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGCGCTCTCGTATGGGATCGT 86 361 1358 Antisense
TCGGCGAGCATGATGTCGACCCGCA 662 605 1388 Antisense
AGCACCGAATCTACGGGTCCAGCTT 419 77 1416 Antisense
CGCGACGTCTCACAGTTGTCATTGT 148 257 1490 Antisense
GTCGCAAATGTCGTTCTGCCGACCG 703 473 1525 Antisense
TGAGATCTGTGGACGCTTCTTCAGC 88 569 1596 Antisense
GACGTGTCCCATGATTCCGGAAGAC 324 377 1645 Antisense
GTCGACAAAGCCTTCGCGACGATCC 652 473 1695 Antisense
AGTCCGATCGAGAAGTCCTACAGGC 152 59 1770 Antisense
ACCTCTTCATTGTTCCCATCAAGAA 627 87 1804 Antisense
GGAACGAACCACGGACCGACTGAGT 168 527 1872 Antisense
Sequence Source Affymetrix Proprietary Database