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[193414_s_at]

Description ZK909.2A /REP_DB=WormBase Gene ID /WP=CE15473 /GEN=kin-1 /TR=O18310 /GB=CAB04168.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Protein kinase C terminal domain
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 46      6grp_highest_sub > 02      6grp_cgc > 42      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 1065.8
(3)
P 		797.3
(-0.3)
P 		600.8
(-2.7)
P 		576.5
(-3)
P 		489
B 1078.4
(3)
P 		825.9
(0.2)
P 		540.2
(-2.9)
P 		530.3
(-3)
P 		548
C 918.8
(3)
P 		587.1
(-3)
P 		587.7
(-3)
P 		625.4
(-2.3)
P 		332
avr 1021
(3) 		736.8
(-0.8) 		576.2
(-3) 		577.4
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1053
1 2 3 4 5 6 range
A 1308.8
(3)
P 		596.4
(-1.1)
P 		858.5
(0.4)
P 		450.2
(-1.9)
P 		694.4
(-0.5)
P 		256.1
(-3)
P 		1053
B 1150.6
(2)
P 		1286.7
(3)
P 		809.1
(-0.6)
P 		905.9
(0.1)
P 		628.5
(-2)
P 		501.4
(-3)
P 		785
C 401.3
(-3)
P 		1272.8
(3)
P 		566.2
(-1.9)
P 		672
(-1.1)
P 		453.1
(-2.6)
P 		421.9
(-2.9)
P 		872
avr 953.6
(2.1) 		1052
(3) 		744.6
(0.2) 		676
(-0.4) 		592
(-1.2) 		393.1
(-3) 		659
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 388.1
(3)
P 		173.1
(-1.2)
P 		157.1
(-1.6)
P 		84.4
(-3)
P 		304
B 343.9
(3)
P 		204
(-0.6)
P 		125.2
(-2.7)
P 		113
(-3)
P 		231
C 304.2
(3)
P 		168.8
(-1.1)
P 		204.8
(0)
P 		105.4
(-3)
P 		199
avr 345.4
(3) 		182
(-1) 		162.4
(-1.5) 		100.9
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 241.3
(3)
P 		212.1
(2)
P 		187
(1.2)
P 		114.2
(-1.3)
P 		209.5
(1.9)
P 		62.3
(-3)
P 		179
B 400.3
(2.3)
P 		428.3
(3)
P 		196.5
(-2.8)
P 		240
(-1.7)
P 		255.4
(-1.3)
P 		187
(-3)
P 		241
C 148.8
(-2.7)
P 		388.4
(3)
P 		144.1
(-2.8)
P 		135.1
(-3)
P 		146.6
(-2.7)
P 		141.2
(-2.9)
P 		253
avr 263.5
(0.8) 		342.9
(3) 		175.9
(-1.7) 		163.1
(-2.1) 		203.8
(-0.9) 		130.2
(-3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193414_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2468
Sequence Type Exemplar sequence
Representative Public ID ZK909.2A NCBI
Target Description ZK909.2A /REP_DB=WormBase Gene ID /WP=CE15473 /GEN=kin-1 /TR=O18310 /GB=CAB04168.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Protein kinase C terminal domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170958(11), NM_170959(11), NM_170960(11), NM_170961(11), NM_061205(11), NM_061204(11), NM_170962(11), NM_170963(11), NM_170964(11), NM_170965(11), NM_170967(11), NM_170966(11), NM_170968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170958 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
NM_170959 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
NM_170960 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
NM_170961 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
NM_061205 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
NM_061204 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
NM_170962 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
NM_170963 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
NM_170964 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
NM_170965 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
NM_170967 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
NM_170966 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
NM_170968 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 None
SNAP00000000349 ENSEMBL cdna:SNAP chromosome:CEL140:I:14956801:14959685:1 11/11 None
GENEFINDER00000000354 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14956801:14959685:1 11/11 None
ZK909.2h.1 ENSEMBL cdna:known chromosome:CEL140:I:14927649:14959685:1 gene:ZK909.2 11/11 None
ZK909.2h.2 ENSEMBL cdna:known chromosome:CEL140:I:14927651:14959685:1 gene:ZK909.2 11/11 None
ZK909.2j ENSEMBL cdna:known chromosome:CEL140:I:14927653:14959569:1 gene:ZK909.2 11/11 A 
ZK909.2g ENSEMBL cdna:known chromosome:CEL140:I:14931083:14959685:1 gene:ZK909.2 11/11 A 
ZK909.2i ENSEMBL cdna:known chromosome:CEL140:I:14931095:14959187:1 gene:ZK909.2 11/11 A 
ZK909.2b ENSEMBL cdna:known chromosome:CEL140:I:14941922:14959187:1 gene:ZK909.2 11/11 A 
ZK909.2a ENSEMBL cdna:known chromosome:CEL140:I:14942022:14959685:1 gene:ZK909.2 11/11 None
ZK909.2f ENSEMBL cdna:known chromosome:CEL140:I:14942929:14959685:1 gene:ZK909.2 11/11 None
ZK909.2k ENSEMBL cdna:known chromosome:CEL140:I:14942951:14959187:1 gene:ZK909.2 11/11 A 
ZK909.2l ENSEMBL cdna:known chromosome:CEL140:I:14945105:14959685:1 gene:ZK909.2 11/11 None
ZK909.2e ENSEMBL cdna:known chromosome:CEL140:I:14945108:14959187:1 gene:ZK909.2 11/11 A 
ZK909.2d ENSEMBL cdna:known chromosome:CEL140:I:14948456:14959187:1 gene:ZK909.2 11/11 A 
ZK909.2m ENSEMBL cdna:known chromosome:CEL140:I:14948463:14959685:1 gene:ZK909.2 11/11 None
ZK909.2c ENSEMBL cdna:known chromosome:CEL140:I:14954125:14958550:1 gene:ZK909.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14941952-14959616(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK909.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45619 Hypothetical protein ZK909.2h [Caenorhabditis elegans] emb|CAD45586.1| Hypothetical protein ZK909.2h [Caenorhabditis elegans] ref|NP_740954.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45617 Hypothetical protein ZK909.2f [Caenorhabditis elegans] emb|CAD45584.1| Hypothetical protein ZK909.2f [Caenorhabditis elegans] ref|NP_740958.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45623 Hypothetical protein ZK909.2l [Caenorhabditis elegans] emb|CAD45590.1| Hypothetical protein ZK909.2l [Caenorhabditis elegans] ref|NP_740960.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45621 Hypothetical protein ZK909.2j [Caenorhabditis elegans] emb|CAD45588.1| Hypothetical protein ZK909.2j [Caenorhabditis elegans] ref|NP_740955.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45622 Hypothetical protein ZK909.2k [Caenorhabditis elegans] emb|CAD45589.1| Hypothetical protein ZK909.2k [Caenorhabditis elegans] ref|NP_740959.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45616 Hypothetical protein ZK909.2e [Caenorhabditis elegans] emb|CAD45583.1| Hypothetical protein ZK909.2e [Caenorhabditis elegans] ref|NP_740961.1| protein KINase family member (kin-1) [Caenorhabditis elegans] sp|P21137|KAPC_CAEEL cAMP-dependent protein kinase catalytic subunit (PKA C) 0.0
blast CAD45618 Hypothetical protein ZK909.2g [Caenorhabditis elegans] emb|CAD45585.1| Hypothetical protein ZK909.2g [Caenorhabditis elegans] ref|NP_740956.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45620 Hypothetical protein ZK909.2i [Caenorhabditis elegans] emb|CAD45587.1| Hypothetical protein ZK909.2i [Caenorhabditis elegans] ref|NP_740957.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 4.0E-67
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 5.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 9.0E-69
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-69
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 5.0E-69
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-69
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-70
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-145
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-146
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-147
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-148
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 0.011
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Sequence
Target Sequence 
>C. ELEGANS:193414_S_AT
ttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctat
cgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgat
ttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatac
ttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcactt
ggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgatt
caaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgag
ttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctg
aaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgcc
atctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTACGCCGCTCAAATTGTGCTTG 188 689 472 Antisense
AATTGTGCTTGCCTTTGAGTACCTT 318 179 486 Antisense
TGAGTACCTTCACTCCTTAGATCTC 68 569 501 Antisense
GAGAACTTGCTTATCGATTCCACTG 245 393 547 Antisense
GAACGTGGACATTGTGCGGCACACC 220 347 620 Antisense
GGCACACCAGAATACTTGGCACCCG 472 535 637 Antisense
ATAAGGCTGTCGATTGGTGGGCACT 655 23 686 Antisense
TACGAAATGGCCGCCGGTTATCCGC 458 647 724 Antisense
TTCTTTGCCGATCAGCCGATTCAAA 668 689 751 Antisense
CCCGTCGCACTTCTCGAATGAGTTG 702 259 810 Antisense
GTACCGACTGGATTGCCATCTATCA 209 459 935 Antisense
Sequence Source Affymetrix Proprietary Database