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[193411_s_at]

Description F25H5.1B /REP_DB=WormBase Gene ID /WP=CE15896 /TR=O17833 /GB=CAB02981.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=LIM domain containing proteins (5 domains)
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 49      4grp_high_8_8 > 49      6grp_highest_nonorm > 51      6grp_total > 13      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 41      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 631
(3)
P 		400.7
(-0.7)
P 		332.3
(-1.8)
P 		257.6
(-3)
P 		373
B 666.4
(3)
P 		397
(-1.1)
P 		427.8
(-0.6)
P 		267.8
(-3)
P 		399
C 653.2
(3)
P 		484
(0.7)
P 		448.7
(0.2)
P 		207.3
(-3)
P 		446
avr 650.2
(3) 		427.2
(-0.3) 		402.9
(-0.7) 		244.2
(-3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 889
1 2 3 4 5 6 range
A 464.1
(-1.3)
P 		861.9
(3)
P 		416.5
(-1.8)
P 		614.3
(0.3)
P 		368.8
(-2.3)
P 		303.3
(-3)
P 		559
B 419.1
(0.9)
P 		500.2
(3)
P 		481.5
(2.5)
P 		434.7
(1.3)
P 		399.6
(0.4)
P 		271.5
(-3)
P 		229
C 1160.7
(3)
P 		522.2
(-1.4)
P 		587.5
(-0.9)
P 		510.9
(-1.5)
P 		520
(-1.4)
P 		285.9
(-3)
P 		875
avr 681.3
(3) 		628.1
(2.2) 		495.2
(0.2) 		520
(0.5) 		429.5
(-0.8) 		286.9
(-3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 229.7
(3)
P 		87
(-1.5)
P 		86.9
(-1.5)
P 		37.7
(-3)
P 		192
B 212.5
(3)
P 		98
(-1.4)
P 		99.1
(-1.4)
P 		57.1
(-3)
P 		155
C 216.2
(3)
P 		139.2
(0.5)
P 		156.4
(1)
P 		35
(-3)
P 		181
avr 219.5
(3) 		108.1
(-0.8) 		114.1
(-0.6) 		43.3
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 85.5
(-2.7)
P 		306.5
(3)
P 		90.7
(-2.6)
P 		155.8
(-0.9)
P 		111.3
(-2)
P 		73.8
(-3)
P 		233
B 145.8
(1.1)
P 		166.5
(3)
P 		116.9
(-1.6)
P 		115.1
(-1.7)
P 		162.4
(2.6)
P 		101.2
(-3)
P 		65
C 430.2
(3)
P 		159.3
(-1.9)
P 		149.5
(-2)
P 		102.7
(-2.9)
P 		168.3
(-1.7)
P 		95.7
(-3)
P 		335
avr 220.5
(3) 		210.8
(2.6) 		119
(-1.7) 		124.5
(-1.4) 		147.3
(-0.4) 		90.2
(-3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193411_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1044
Sequence Type Exemplar sequence
Representative Public ID F25H5.1B NCBI
Target Description F25H5.1B /REP_DB=WormBase Gene ID /WP=CE15896 /TR=O17833 /GB=CAB02981.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=LIM domain containing proteins (5 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026239(11), NM_001026238(11), NM_001026236(11), NM_001030056(11), NM_001030057(11), NM_001026237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026239 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001026238 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001026236 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001030056 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001030057 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001026237 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
SNAP00000024324 ENSEMBL cdna:SNAP chromosome:CEL140:I:9190746:9193160:-1 11/11 None
GENEFINDER00000024327 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9190746:9200951:-1 11/11 None
F25H5.1f ENSEMBL cdna:known chromosome:CEL140:I:9189942:9218461:-1 gene:F25H5.1 11/11 None
F25H5.1e ENSEMBL cdna:known chromosome:CEL140:I:9191122:9200951:-1 gene:F25H5.1 11/11 None
F25H5.1d.2 ENSEMBL cdna:known chromosome:CEL140:I:9191197:9193302:-1 gene:F25H5.1 11/11 None
F25H5.1d.1 ENSEMBL cdna:known chromosome:CEL140:I:9191197:9193190:-1 gene:F25H5.1 11/11 None
F25H5.1a ENSEMBL cdna:known chromosome:CEL140:I:9191197:9218461:-1 gene:F25H5.1 11/11 A 
F25H5.1c.2 ENSEMBL cdna:known chromosome:CEL140:I:9191197:9218463:-1 gene:F25H5.1 11/11 None
F25H5.1b ENSEMBL cdna:known chromosome:CEL140:I:9191197:9207426:-1 gene:F25H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9191127-9200882(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30229 Hypothetical protein F25H5.1f [Caenorhabditis elegans] emb|CAI46551.1| Hypothetical protein F25H5.1f [Caenorhabditis elegans] ref|NP_001021410.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02980 Hypothetical protein F25H5.1a [Caenorhabditis elegans] emb|CAI46552.1| Hypothetical protein F25H5.1a [Caenorhabditis elegans] ref|NP_001025227.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30228 Hypothetical protein F25H5.1c [Caenorhabditis elegans] emb|CAI46550.1| Hypothetical protein F25H5.1c [Caenorhabditis elegans] ref|NP_001021407.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02981 Hypothetical protein F25H5.1e [Caenorhabditis elegans] ref|NP_001021409.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30230 Hypothetical protein F25H5.1b [Caenorhabditis elegans] emb|CAI46553.1| Hypothetical protein F25H5.1b [Caenorhabditis elegans] ref|NP_001025228.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR010442 EMBL-EBI PET 2.7E-50
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.3E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:193411_S_AT
aggacctatcgtacaaagacaagcattggcacgagcactgctttttgtgtagtatgtgca
aaatatctctcgtcgacatgccatttggaagtaaaaatgatcgaattttctgctcgaatt
gttacgaccaagcatttgcgacaagatgtgacggatgcaatgagattttccgagcaggaa
tgaaaaagatggaatacaaaggcaaacaatggcatgataaatgtttctgttgtgctcatt
gtaaattggcaattggaacaaaatcgttcataccgaaaaatgatgatgtattctgtggcc
cgtgttacgaagaaaagtttgcaacaagatgctccaaatgcaaaaaagtgataactgctg
gaggtgtcacatataagaatgaaccatggcatcgtgaatgtttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACCTATCGTACAAAGACAAGCA 329 53 770 Antisense
AGACAAGCATTGGCACGAGCACTGC 105 73 786 Antisense
CGAGCACTGCTTTTTGTGTAGTATG 644 249 801 Antisense
GTATGTGCAAAATATCTCTCGTCGA 353 453 821 Antisense
TCTCTCGTCGACATGCCATTTGGAA 488 611 835 Antisense
GAATTTTCTGCTCGAATTGTTACGA 511 325 872 Antisense
TTGTTACGACCAAGCATTTGCGACA 47 701 888 Antisense
ATGATGATGTATTCTGTGGCCCGTG 605 45 1049 Antisense
TATTCTGTGGCCCGTGTTACGAAGA 275 665 1058 Antisense
GATAACTGCTGGAGGTGTCACATAT 337 423 1119 Antisense
GAACCATGGCATCGTGAATGTTTCT 214 345 1150 Antisense
Sequence Source Affymetrix Proprietary Database