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[193408_at] 7TM chemoreceptor (srd-family)

Description F53F1.11 /REP_DB=WormBase Gene ID /WP=CE10952 /GEN=srd-19 /TR=P92002 /GB=CAB03132.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster 6grp_total > 60      4grp_total > 16      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 8.1
(-3)
A 		39.5
(1.7)
A 		16.3
(-1.8)
A 		48
(3)
A 		40
B 10.2
(-3)
A 		29.5
(0.2)
A 		10.5
(-3)
A 		46.2
(3)
A 		36
C 19
(-1.1)
A 		3.3
(-3)
A 		52.6
(3)
A 		35.3
(0.9)
A 		49
avr 12.4
(-3) 		24.1
(-0.7) 		26.5
(-0.3) 		43.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 28.7
(3)
A 		3
(-2.8)
A 		6.8
(-1.9)
A 		25.8
(2.4)
A 		11.6
(-0.8)
A 		1.9
(-3)
A 		27
B 9.7
(-2.5)
A 		19.2
(-1)
A 		27.2
(0.3)
A 		44.9
(3)
A 		8.4
(-2.7)
A 		6.2
(-3)
A 		39
C 7.7
(-2.2)
A 		31.9
(3)
A 		10.8
(-1.5)
A 		3.9
(-3)
A 		8.4
(-2)
A 		20.7
(0.6)
A 		28
avr 15.4
(-0.7) 		18
(0.3) 		14.9
(-0.9) 		24.9
(3) 		9.5
(-3) 		9.6
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3
(-3)
A 		8.6
(3)
A 		4.3
(-1.6)
A 		7
(1.3)
A 		6
B 3.3
(-2.3)
A 		7.3
(1)
A 		2.4
(-3)
A 		9.8
(3)
A 		7
C 6.3
(-1.2)
A 		1
(-3)
A 		18.3
(3)
A 		6
(-1.3)
A 		17
avr 4.2
(-3) 		5.6
(-1) 		8.3
(3) 		7.6
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.3
(1.7)
A 		1.1
(-2.4)
A 		1.5
(-2)
A 		6.6
(3)
A 		3.5
(-0)
A 		0.5
(-3)
A 		6
B 3.4
(-2.3)
A 		6.4
(-0.4)
A 		6.6
(-0.3)
A 		11.9
(3)
A 		3.4
(-2.3)
A 		2.3
(-3)
A 		10
C 2.9
(-1.6)
A 		9.7
(3)
A 		2.7
(-1.7)
A 		0.8
(-3)
A 		2.7
(-1.7)
A 		6.9
(1.1)
A 		9
avr 3.9
(-1.7) 		5.7
(1.7) 		3.6
(-2.3) 		6.4
(3) 		3.2
(-3) 		3.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193408_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13591
Sequence Type Exemplar sequence
Representative Public ID F53F1.11 NCBI
Target Description F53F1.11 /REP_DB=WormBase Gene ID /WP=CE10952 /GEN=srd-19 /TR=P92002 /GB=CAB03132.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073930 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-19) (srd-19) mRNA, complete cds. 11/11 None
GENEFINDER00000038191 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13430198:13431262:-1 11/11 None
F53F1.11 ENSEMBL cdna:known chromosome:CEL140:V:13430198:13431351:-1 gene:F53F1.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038187 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13430197-13431351(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor (srd-family)
Gene Symbol srd-19
Ensembl F53F1.11
Entrez Gene 191808 Entrez gene
SwissProt P92002 EMBL-EBI
WormBase CE10952 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03132 Hypothetical protein F53F1.11 [Caenorhabditis elegans] ref|NP_506331.1| Serpentine Receptor, class D (delta) family member (srd-19) [Caenorhabditis elegans] sp|P92002|SRD19_CAEEL Serpentine receptor class delta-19 (Protein srd-19) 0.0
blast CAB03132 Hypothetical protein F53F1.11 [Caenorhabditis elegans] ref|NP_506331.1| Serpentine Receptor, class D (delta) family member (srd-19) [Caenorhabditis elegans] sp|P92002|SRD19_CAEEL Serpentine receptor class delta-19 (Protein srd-19) 1.0E-176
blast AAD14742 Serpentine receptor, class d (delta) protein 20 [Caenorhabditis elegans] ref|NP_504569.1| Serpentine Receptor, class D (delta) family member (srd-20) [Caenorhabditis elegans] 1.0E-164
blast AAD14742 Serpentine receptor, class d (delta) protein 20 [Caenorhabditis elegans] ref|NP_504569.1| Serpentine Receptor, class D (delta) family member (srd-20) [Caenorhabditis elegans] 1.0E-154
blast CAB03131 Hypothetical protein F53F1.10 [Caenorhabditis elegans] ref|NP_506330.1| Serpentine Receptor, class D (delta) family member (srd-18) [Caenorhabditis elegans] sp|P92001|SRD18_CAEEL Serpentine receptor class delta-18 (Protein srd-18) 1.0E-142
blast CAB03131 Hypothetical protein F53F1.10 [Caenorhabditis elegans] ref|NP_506330.1| Serpentine Receptor, class D (delta) family member (srd-18) [Caenorhabditis elegans] sp|P92001|SRD18_CAEEL Serpentine receptor class delta-18 (Protein srd-18) 1.0E-133
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506331.1 6 7-29,90-112,125-147,185-207,233-255,270-292
F53F1.11 6 7-29,90-112,125-147,185-207,233-255,270-292
GENEFINDER00000038191 5 61-83,96-118,156-178,204-226,241-263
Sequence
Target Sequence 
>C. ELEGANS:193408_AT
aatgttctacataccgtccttggttcaagcacttacctattggacattatttgttcctcg
agaaaaaattctcccgctcgctaaacaatggtttccctactatgatcttgaaactgaaac
tggggttctcacgggtgtaatagacctcacaaatttcgttgcagtctatgcagttgcaca
tatttgcctgccgtttttcccagtttacataacaatttttgtcttacgccagaaaattat
gaaatacctgggcggtcaatctcaaatgatgtctcaagacacaaaagctgctcatactca
attactcagagcacttactacacaagcaattattccaatgttcttagggattgctgttct
tctttatttttcttcacaatcaggactactcaaatcaccaattcttgagtattcgatatt
ttcagttgctattctaatgcctgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTCTACATACCGTCCTTGGTT 461 163 408 Antisense
GTCCTTGGTTCAAGCACTTACCTAT 262 477 423 Antisense
TCTCCCGCTCGCTAAACAATGGTTT 326 611 477 Antisense
TGAAACTGGGGTTCTCACGGGTGTA 389 573 522 Antisense
GACCTCACAAATTTCGTTGCAGTCT 476 383 550 Antisense
AGTTGCACATATTTGCCTGCCGTTT 406 65 579 Antisense
GAAATACCTGGGCGGTCAATCTCAA 285 363 648 Antisense
AAAGCTGCTCATACTCAATTACTCA 193 125 691 Antisense
ATTACTCAGAGCACTTACTACACAA 316 13 708 Antisense
TTGCTGTTCTTCTTTATTTTTCTTC 622 701 758 Antisense
TCAGTTGCTATTCTAATGCCTGCAT 553 623 829 Antisense
Sequence Source Affymetrix Proprietary Database