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[193407_at] S.pombe hypothetical protein C21E11.07 like

Description F39H2.3 /REP_DB=WormBase Gene ID /WP=CE10130 /TR=P90872 /GB=CAB03184.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C21E11.07 like
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 74      6grp_total > 64      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 459.1
(-2)
P 		896.7
(3)
P 		624.8
(-0.1)
P 		372
(-3)
P 		525
B 490.8
(-2.2)
P 		763.3
(3)
P 		765.3
(3)
P 		445.8
(-3)
P 		320
C 481.1
(-3)
P 		716.6
(3)
P 		715.4
(3)
P 		594.3
(-0.1)
P 		236
avr 477
(-2.9) 		792.2
(3) 		701.8
(1.3) 		470.7
(-3) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 424.2
(-3)
P 		547.5
(-1.1)
P 		819.7
(3)
P 		629.1
(0.1)
P 		662.4
(0.6)
P 		789
(2.5)
P 		396
B 424.9
(-3)
P 		685
(1.5)
P 		770.5
(3)
P 		705.1
(1.9)
P 		581.2
(-0.3)
P 		764.4
(2.9)
P 		346
C 426
(-3)
P 		595.3
(-0.7)
P 		701.4
(0.8)
P 		862.3
(3)
P 		609.4
(-0.5)
P 		832.2
(2.6)
P 		436
avr 425
(-3) 		609.3
(-0) 		763.9
(2.5) 		732.2
(2) 		617.7
(0.1) 		795.2
(3) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 167.1
(1.8)
P 		194.7
(3)
P 		163.3
(1.7)
P 		54.5
(-3)
P 		140
B 156.5
(0.9)
P 		188.5
(3)
P 		177.3
(2.3)
P 		95
(-3)
P 		94
C 159.2
(-0.6)
P 		206
(1.3)
P 		249.3
(3)
P 		100.2
(-3)
P 		149
avr 160.9
(1.1) 		196.4
(3) 		196.6
(3) 		83.2
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 78.2
(-3)
P 		194.7
(2.7)
P 		178.5
(1.9)
P 		159.6
(1)
P 		199.9
(3)
P 		192.1
(2.6)
P 		122
B 147.8
(-3)
P 		228
(0.5)
P 		187.1
(-1.3)
P 		186.7
(-1.3)
P 		236.2
(0.9)
P 		285
(3)
P 		137
C 157.9
(-3)
P 		181.7
(-1.8)
P 		178.5
(-2)
P 		173.4
(-2.2)
P 		197.2
(-1)
P 		278.6
(3)
P 		121
avr 128
(-3) 		201.5
(0.6) 		181.4
(-0.4) 		173.2
(-0.8) 		211.1
(1) 		251.9
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1688
Sequence Type Exemplar sequence
Representative Public ID F39H2.3 NCBI
Target Description F39H2.3 /REP_DB=WormBase Gene ID /WP=CE10130 /TR=P90872 /GB=CAB03184.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C21E11.07 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059945 NCBI Caenorhabditis elegans F39H2.3 (F39H2.3) mRNA, complete cds. 11/11 None
F39H2.3 ENSEMBL cdna:known chromosome:CEL140:I:8673101:8674617:1 gene:F39H2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033544 5/11 Cross Hyb Matching Probes None
GENEFINDER00000033558 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8672956-8674290(+) 100.0 100.0
Public Domain and Genome References
Gene Title S.pombe hypothetical protein C21E11.07 like
Ensembl F39H2.3
Entrez Gene 172668 Entrez gene
SwissProt P90872 EMBL-EBI
WormBase CE37516 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13519_AT glycine cleavage T family protein / aminomethyl transferase family protein at
ATH1-121501:254854_AT glycine cleavage T family protein / aminomethyl transferase family protein at
CANINE:1605672_AT similar to CG8043-PA cfa
CANINE_2:CFA.2550.1.S1_AT similar to CG8043-PA cfa
CANINE_2:CFAAFFX.2645.1.S1_AT similar to CG8043-PA cfa
DROSOPHILA_2:1638215_AT dm
DROSGENOME1:152557_AT dm
CHICKEN:GGAAFFX.12045.1.S1_S_AT similar to hypothetical protein A230051G13 gga
MG-U74BV2:109969_AT RIKEN cDNA A230051G13 gene mm
MOE430B:1435808_AT RIKEN cDNA A230051G13 gene mm
MOUSE430_2:1435808_AT RIKEN cDNA A230051G13 gene mm
MG-U74BV2:105493_AT RIKEN cDNA A230051G13 gene, mRNA (cDNA clone MGC:107430 IMAGE:6432747) mm
MOUSE430_2:1457315_AT RIKEN cDNA A230051G13 gene, mRNA (cDNA clone MGC:107430 IMAGE:6432747) mm
MOE430B:1457315_AT RIKEN cDNA A230051G13 gene, mRNA (cDNA clone MGC:107430 IMAGE:6432747) mm
MU19KSUBB:TC30066_AT RIKEN cDNA A230051G13 gene, mRNA (cDNA clone MGC:107430 IMAGE:6432747) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4047 aminomethyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03184 Hypothetical protein F39H2.3 [Caenorhabditis elegans] emb|CAB03089.2| Hypothetical protein F39H2.3 [Caenorhabditis elegans] ref|NP_492346.2| F39H2.3 [Caenorhabditis elegans] 1.0E-155
blast CAE68900 Hypothetical protein CBG14872 [Caenorhabditis briggsae] 1.0E-135
blast EAL28126 GA20785-PA [Drosophila pseudoobscura] 9.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR006222 EMBL-EBI Glycine cleavage T protein (aminomethyl transferase) 6.5E-37
Pfam IPR006222 EMBL-EBI Glycine cleavage T protein (aminomethyl transferase) 9.8E-41
Sequence
Target Sequence 
>C. ELEGANS:193407_AT
aatcaccgaatcttccgatcaaatatttttcacagaagatgtatcggacaaacaagctca
ccgcgatcctcgattttctggttttggagctcgcgttttcggtaatccgtcttcatcgga
agttagcgaaaatcgagaaaaatatgaaaatttgcgacgatctgctggaattgcagaagg
atctcaagaattggcggagttgcttccttttcaggcaaacggtgatctgctcaatatggt
ttcacttgataaaggatgttatgttggacaggaattaactgcaagaactgctcatacagg
tgttatccgtcgacgaatcttaccatttgaatgtgaaggtcaagtcaaaattggagcaga
agttctggacgagaagaaaaataaagtcggaaagattatctcttctgacacaactcgttg
cctgggaattcttcaactttcttcattcaaatctcaaaaattgacagctgatggagtttc
gttaaccgcaaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACCGAATCTTCCGATCAAATA 244 171 369 Antisense
TCGGACAAACAAGCTCACCGCGATC 423 605 412 Antisense
AGCTCGCGTTTTCGGTAATCCGTCT 627 79 456 Antisense
ATTTGCGACGATCTGCTGGAATTGC 509 15 518 Antisense
GAATTGGCGGAGTTGCTTCCTTTTC 356 323 556 Antisense
GCTTCCTTTTCAGGCAAACGGTGAT 483 305 570 Antisense
GCTCATACAGGTGTTATCCGTCGAC 314 301 658 Antisense
TCCGTCGACGAATCTTACCATTTGA 673 577 674 Antisense
ATTATCTCTTCTGACACAACTCGTT 247 13 763 Antisense
ACAACTCGTTGCCTGGGAATTCTTC 463 111 778 Antisense
ATGGAGTTTCGTTAACCGCAAAGCA 141 53 839 Antisense
Sequence Source Affymetrix Proprietary Database