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[193401_at] 7 transmembrane receptor (rhodopsin family)

Description H09F14.1 /REP_DB=WormBase Gene ID /WP=CE16172 /TR=O45613 /GB=CAB08739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 05      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 258.2
(-0.4)
P 		111.1
(-2.9)
P 		104.6
(-3)
P 		457.2
(3)
P 		353
B 244.7
(-1)
P 		114.7
(-2.9)
P 		109.8
(-3)
P 		518.4
(3)
P 		409
C 270.8
(-0.9)
P 		159.1
(-2.4)
P 		112.4
(-3)
P 		566.2
(3)
P 		454
avr 257.9
(-0.8) 		128.3
(-2.7) 		108.9
(-3) 		513.9
(3) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 295.4
(3)
P 		201.3
(-0.8)
P 		215.7
(-0.2)
P 		146.2
(-3)
P 		183.6
(-1.5)
P 		159.2
(-2.5)
P 		149
B 289.7
(3)
P 		277
(2.5)
P 		145.2
(-3)
P 		183.3
(-1.4)
P 		188.8
(-1.2)
P 		188
(-1.2)
P 		145
C 247.7
(2.4)
P 		263.5
(3)
P 		145.5
(-1.8)
P 		149.2
(-1.7)
P 		116.6
(-3)
P 		195.8
(0.2)
P 		147
avr 277.6
(3) 		247.3
(1.5) 		168.8
(-2.5) 		159.6
(-3) 		163
(-2.8) 		181
(-1.9) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 94
(3)
P 		24.1
(-3)
P 		27.3
(-2.7)
P 		66.9
(0.7)
P 		70
B 78
(0.7)
P 		28.3
(-2.8)
P 		25.4
(-3)
P 		110.5
(3)
P 		85
C 89.6
(2.4)
P 		45.7
(-2.3)
P 		39.2
(-3)
P 		95.5
(3)
P 		56
avr 87.2
(2.6) 		32.7
(-2.8) 		30.6
(-3) 		91
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 54.5
(0)
P 		71.6
(3)
P 		47
(-1.3)
P 		37.1
(-3)
P 		55.4
(0.2)
P 		38.8
(-2.7)
P 		35
B 100.8
(3)
P 		92.2
(2.2)
P 		35.3
(-3)
P 		48.5
(-1.8)
P 		76.7
(0.8)
P 		70.1
(0.2)
P 		66
C 91.8
(3)
P 		80.4
(1.9)
P 		37
(-2.3)
P 		30
(-3)
P 		37.7
(-2.3)
P 		65.5
(0.4)
P 		62
avr 82.4
(3) 		81.4
(2.9) 		39.8
(-2.8) 		38.5
(-3) 		56.6
(-0.5) 		58.1
(-0.3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11750
Sequence Type Exemplar sequence
Representative Public ID H09F14.1 NCBI
Target Description H09F14.1 /REP_DB=WormBase Gene ID /WP=CE16172 /TR=O45613 /GB=CAB08739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073323 NCBI Caenorhabditis elegans H09F14.1 (H09F14.1) mRNA, complete cds. 11/11 None
SNAP00000026078 ENSEMBL cdna:SNAP chromosome:CEL140:V:10615520:10618173:-1 10/11 None
GENEFINDER00000026079 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10615520:10618173:-1 10/11 None
H09F14.1 ENSEMBL cdna:known chromosome:CEL140:V:10615520:10618095:-1 gene:H09F14.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10615519-10618095(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl H09F14.1
Entrez Gene 186709 Entrez gene
SwissProt O45613 EMBL-EBI
WormBase CE16172 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB08739 Hypothetical protein H09F14.1 [Caenorhabditis elegans] ref|NP_505724.1| H09F14.1 [Caenorhabditis elegans] 0.0
blast CAE64860 Hypothetical protein CBG09656 [Caenorhabditis briggsae] 1.0E-170
blast CAE64860 Hypothetical protein CBG09656 [Caenorhabditis briggsae] 1.0E-167
blast CAE64860 Hypothetical protein CBG09656 [Caenorhabditis briggsae] 1.0E-166
blast XP_395140 PREDICTED: similar to ENSANGP00000022942 [Apis mellifera] 7.0E-15
blast XP_395140 PREDICTED: similar to ENSANGP00000022942 [Apis mellifera] 9.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505724.1 7 10-32,44-66,70-92,122-141,166-188,209-231,255-277
H09F14.1 7 10-32,44-66,70-92,122-141,166-188,209-231,255-277
SNAP00000026078 7 36-58,70-92,107-129,150-172,192-214,255-277,297-319
GENEFINDER00000026079 7 36-58,70-92,96-118,148-170,190-212,253-275,295-317
Sequence
Target Sequence 
>C. ELEGANS:193401_AT
tactttgctacgtggtaccatgtggaataattgttgttctgaacattcttgttgcactac
aagtacaaaaatcacaagaacatttcatggcagaaactaaaaagagcaattcaagaagaa
ctggaggatcatcatcatcatctggtacatggaccagaattctttgggttatgccattag
tgttcgtagtattgaacaccccattctattcacccccatcaggagatacaagatcagaac
tttttgtgactgtttataatactgctcattacatgtactacatgaacacggcaattgatg
tattggtctacgcattttccagtgcaaatttccgcaaaactgctgtcattgcttggaagc
gaattctttgtccaggatacgcagaacggcaaaagggaaaggtactcgtaacggatcaaa
cttcgagaatctcctatcgtatgacgtctgaaagaagtacaatccgtttcccaaacactc
cttctagagccaattcaccaaagttaactgcttcaaatgcggtttctgttccattacttg
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTTGCTACGTGGTACCATGTGG 527 643 512 Antisense
GGGTTATGCCATTAGTGTTCGTAGT 367 497 677 Antisense
TATTGAACACCCCATTCTATTCACC 642 665 701 Antisense
TATTCACCCCCATCAGGAGATACAA 518 661 718 Antisense
ATTGGTCTACGCATTTTCCAGTGCA 335 3 813 Antisense
AACTGCTGTCATTGCTTGGAAGCGA 645 139 849 Antisense
AAGCGAATTCTTTGTCCAGGATACG 503 145 868 Antisense
GAGAATCTCCTATCGTATGACGTCT 504 391 936 Antisense
TTCCCAAACACTCCTTCTAGAGCCA 160 697 979 Antisense
GTTAACTGCTTCAAATGCGGTTTCT 302 445 1014 Antisense
TGCGGTTTCTGTTCCATTACTTGGA 236 583 1029 Antisense
Sequence Source Affymetrix Proprietary Database