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[193399_s_at]

Description T10E9.7 /REP_DB=WormBase Gene ID /WP=CE13555 /TR=O01602 /GB=AAB52474.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=NADH-ubiquinone oxidoredutase 30 kd subunit
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 41      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 26      6grp_total > 31      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5588
1 2 3 4 range
A 6066.5
(0.5)
P 		7775.3
(2.5)
P 		8184.9
(3)
P 		2997.3
(-3)
P 		5188
B 5473.4
(0.8)
P 		6591.9
(2.5)
P 		6910.9
(3)
P 		3044.8
(-3)
P 		3866
C 5730.1
(1.1)
P 		7171.1
(3)
P 		6771.7
(2.5)
P 		2597.3
(-3)
P 		4574
avr 5756.7
(0.9) 		7179.4
(2.9) 		7289.2
(3) 		2879.8
(-3) 		4409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4692
1 2 3 4 5 6 range
A 6964.7
(2.3)
P 		6763.4
(1.9)
P 		7368.7
(3)
P 		7139.7
(2.6)
P 		5405.7
(-0.4)
P 		3923
(-3)
P 		3446
B 6293.3
(0.1)
P 		7070.4
(1.2)
P 		8474.8
(3)
P 		6673.6
(0.6)
P 		5599.6
(-0.8)
P 		3892.1
(-3)
P 		4583
C 5791
(0.2)
P 		7047.2
(2.2)
P 		7514.2
(3)
P 		7011
(2.2)
P 		5645.9
(-0)
P 		3782.8
(-3)
P 		3731
avr 6349.7
(0.8) 		6960.3
(1.7) 		7785.9
(3) 		6941.4
(1.7) 		5550.4
(-0.4) 		3866
(-3) 		3920
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1922
1 2 3 4 range
A 2208.8
(3)
P 		1687.8
(1.2)
P 		2139.7
(2.8)
P 		438.7
(-3)
P 		1770
B 1745.4
(3)
P 		1628.1
(2.4)
P 		1601.4
(2.2)
P 		648.9
(-3)
P 		1097
C 1896.8
(1.6)
P 		2061.7
(2.1)
P 		2360.1
(3)
P 		437.9
(-3)
P 		1922
avr 1950.3
(2.7) 		1792.5
(2.1) 		2033.7
(3) 		508.5
(-3) 		1525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1450
1 2 3 4 5 6 range
A 1283.9
(-1.6)
P 		2405.4
(3)
P 		1604.7
(-0.3)
P 		1810.8
(0.5)
P 		1631.2
(-0.2)
P 		955.1
(-3)
P 		1450
B 2189.8
(1.9)
P 		2353.5
(3)
P 		2057.9
(1)
P 		1767.6
(-0.9)
P 		2275.1
(2.5)
P 		1451.4
(-3)
P 		902
C 2146.5
(3)
P 		2150.3
(3)
P 		1912.5
(1.4)
P 		1409.9
(-2)
P 		1826.9
(0.8)
P 		1266.3
(-3)
P 		884
avr 1873.4
(0.6) 		2303.1
(3) 		1858.4
(0.5) 		1662.8
(-0.6) 		1911.1
(0.8) 		1224.3
(-3) 		1079
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193399_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1718
Sequence Type Exemplar sequence
Representative Public ID T10E9.7 NCBI
Target Description T10E9.7 /REP_DB=WormBase Gene ID /WP=CE13555 /TR=O01602 /GB=AAB52474.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=NADH-ubiquinone oxidoredutase 30 kd subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181996(11), NM_059480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181996 NCBI Caenorhabditis elegans T10E9.7b (T10E9.7) mRNA, complete cds. 11/11 None
NM_059480 NCBI Caenorhabditis elegans T10E9.7a (T10E9.7) mRNA, complete cds. 11/11 None
SNAP00000042990 ENSEMBL cdna:SNAP chromosome:CEL140:I:6538374:6540094:-1 11/11 None
GENEFINDER00000043000 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6538374:6540094:-1 11/11 None
T10E9.7b ENSEMBL cdna:known chromosome:CEL140:I:6538279:6540097:-1 gene:T10E9.7 11/11 None
T10E9.7a ENSEMBL cdna:known chromosome:CEL140:I:6538374:6541165:-1 gene:T10E9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6538302-6541030(-) 100.0 100.0
Public Domain and Genome References
Ensembl T10E9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52474 Hypothetical protein T10E9.7a [Caenorhabditis elegans] ref|NP_491881.2| T10E9.7a [Caenorhabditis elegans] 0.0
blast CAE67231 Hypothetical protein CBG12670 [Caenorhabditis briggsae] 0.0
blast AAB52474 Hypothetical protein T10E9.7a [Caenorhabditis elegans] ref|NP_491881.2| T10E9.7a [Caenorhabditis elegans] 1.0E-155
blast AAO21397 Hypothetical protein T10E9.7b [Caenorhabditis elegans] ref|NP_871796.1| T10E9.7b [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR001268 EMBL-EBI NADH dehydrogenase (ubiquinone), 30 kDa subunit 6.0E-46
Pfam IPR004087 EMBL-EBI KH 6.4E-10
Pfam IPR001268 EMBL-EBI NADH dehydrogenase (ubiquinone), 30 kDa subunit 6.0E-46
Sequence
Target Sequence 
>C. ELEGANS:193399_S_AT
tgcagccgagtgcctgccaaagtttgtgcaaaaagtgcaatttgcagccggagacgagtt
agagctcttgattcatccatcaggagttgttccagttctttccttccttaaaggaaatca
ttctgctcaattcaccaacttaaccttcatcaccggaatggatgttccaactcgcaagaa
tcgtcttgaagttatttattcgctttactctgttcgattcaacgccagagttcgtgttcg
tacatacactgatgaaattgctccaatcgattctgccactccagttttcaagggtgctga
ctggtttgagcgtgaagtgtacgatatgtatggagtatggttcaacaatcacccagatct
tcgaagaattctcactgattacggtttcgagggtcacccattccgcaaggattatccact
ttcgggatacaacgaggtccgctacgatccagagctgaagcgtgtcgtctatgaaccatc
tgaattggctcaagaattccgtaaattcgatttgaacactccatgggagacattcccagc
cttccgtaatcagtcgatcaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGCCGAGTGCCTGCCAAAGTTT 61 579 594 Antisense
AGAGCTCTTGATTCATCCATCAGGA 694 69 654 Antisense
CAGGAGTTGTTCCAGTTCTTTCCTT 703 207 674 Antisense
GGAAATCATTCTGCTCAATTCACCA 329 527 706 Antisense
TCAATTCACCAACTTAACCTTCATC 495 633 720 Antisense
TATTCGCTTTACTCTGTTCGATTCA 653 661 790 Antisense
CTGCCACTCCAGTTTTCAAGGGTGC 270 235 866 Antisense
GTTCAACAATCACCCAGATCTTCGA 435 445 933 Antisense
GATTACGGTTTCGAGGGTCACCCAT 32 421 970 Antisense
GAAGCGTGTCGTCTATGAACCATCT 200 343 1050 Antisense
CCTTCCGTAATCAGTCGATCACCAG 31 267 1133 Antisense
Sequence Source Affymetrix Proprietary Database