[Home] | [Total List]

[193397_at] signal recognition particle 68 KD protein

Description F55C5.8 /REP_DB=WormBase Gene ID /WP=CE20875 /TR=SW:Q20822 /GB=CAB01573.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=signal recognition particle 68 KD protein
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 76      6grp_total > 50      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 1271.9
(3)
P 		1120.9
(0)
P 		1264
(2.8)
P 		966
(-3)
P 		306
B 1155
(-0.2)
P 		1125.8
(-0.9)
P 		1285.4
(3)
P 		1040.5
(-3)
P 		245
C 1242.7
(1)
P 		999.2
(-2.6)
P 		1381
(3)
P 		970.9
(-3)
P 		410
avr 1223.2
(1.4) 		1082
(-1.3) 		1310.1
(3) 		992.5
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 1240.2
(0.1)
P 		1261.7
(0.4)
P 		996.2
(-3)
P 		1466.2
(3)
P 		1005.3
(-2.9)
P 		1072.9
(-2)
P 		470
B 1316.1
(3)
P 		1150.4
(0)
P 		1053.2
(-1.7)
P 		1278.2
(2.3)
P 		1029.7
(-2.1)
P 		981.2
(-3)
P 		335
C 1348.8
(2.7)
P 		1066.6
(-0.9)
P 		1375.7
(3)
P 		1350.1
(2.7)
P 		895.7
(-3)
P 		1031.1
(-1.3)
P 		480
avr 1301.7
(2) 		1159.6
(-0.2) 		1141.7
(-0.5) 		1364.8
(3) 		976.9
(-3) 		1028.4
(-2.2) 		388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 463.1
(3)
P 		243.3
(-1.1)
P 		330.4
(0.5)
P 		141.4
(-3)
P 		322
B 368.3
(3)
P 		278
(-0.7)
P 		297.9
(0.1)
P 		221.7
(-3)
P 		147
C 411.4
(1.7)
P 		287.3
(-0.7)
P 		481.3
(3)
P 		163.7
(-3)
P 		318
avr 414.3
(3) 		269.5
(-0.6) 		369.9
(1.9) 		175.6
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 228.6
(-2.7)
P 		448.7
(3)
P 		216.9
(-3)
P 		371.9
(1)
P 		303.4
(-0.8)
P 		261.2
(-1.9)
P 		232
B 457.9
(3)
P 		382.9
(0.8)
P 		255.7
(-3)
P 		338.5
(-0.5)
P 		418.4
(1.8)
P 		365.9
(0.3)
P 		202
C 500
(3)
P 		325.5
(-1.6)
P 		350.1
(-0.9)
P 		271.5
(-3)
P 		289.8
(-2.5)
P 		345.2
(-1.1)
P 		229
avr 395.5
(3) 		385.7
(2.5) 		274.2
(-3) 		327.3
(-0.4) 		337.2
(0.1) 		324.1
(-0.5) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12544
Sequence Type Exemplar sequence
Representative Public ID F55C5.8 NCBI
Target Description F55C5.8 /REP_DB=WormBase Gene ID /WP=CE20875 /TR=SW:Q20822 /GB=CAB01573.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=signal recognition particle 68 KD protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073682 NCBI Caenorhabditis elegans F55C5.8 (F55C5.8) mRNA, complete cds. 11/11 None
SNAP00000005352 ENSEMBL cdna:SNAP chromosome:CEL140:V:12291904:12294242:-1 11/11 None
GENEFINDER00000005354 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12291904:12294242:-1 11/11 None
F55C5.8 ENSEMBL cdna:known chromosome:CEL140:V:12291510:12294246:-1 gene:F55C5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12291903-12294242(-) 100.0 100.0
Public Domain and Genome References
Gene Title signal recognition particle 68 KD protein
Ensembl F55C5.8
Entrez Gene 179686 Entrez gene
SwissProt Q20822 EMBL-EBI
WormBase CE20875 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247505_AT signal recognition particle-related / SRP-related at
CANINE:1596369_AT signal recognition particle 68kDa cfa
CANINE:1588688_S_AT signal recognition particle 68kDa cfa
CANINE_2:CFA.3809.1.A1_S_AT signal recognition particle 68kDa cfa
CANINE:1594476_S_AT 68kDA subunit of signal recognition particle cfa
DROSOPHILA_2:1634672_AT dm
DROSGENOME1:154957_AT dm
CHICKEN:GGAAFFX.12704.1.S1_S_AT signal recognition particle 68kDa gga
CHICKEN:GGAAFFX.1361.1.S1_AT signal recognition particle 68kDa gga
CHICKEN:GGAAFFX.1361.1.S1_S_AT signal recognition particle 68kDa gga
HU35KSUBA:RC_AA455242_AT signal recognition particle 68kDa hs
U133_X3P:HS.273307.0.S2_3P_S_AT signal recognition particle 68kDa hs
HG-U133_PLUS_2:224607_S_AT signal recognition particle 68kDa hs
HG-U133B:224607_S_AT signal recognition particle 68kDa hs
HG-U95B:44745_AT signal recognition particle 68kDa hs
HG-U95E:87378_AT signal recognition particle 68kDa hs
HG-U95E:78062_AT Signal recognition particle 68kDa hs
MG-U74AV2:95692_AT signal recognition particle 68 mm
MG-U74CV2:169414_F_AT signal recognition particle 68 mm
MOE430A:1433708_AT signal recognition particle 68 mm
MOUSE430A_2:1433708_AT signal recognition particle 68 mm
MOUSE430_2:1433708_AT signal recognition particle 68 mm
MU19KSUBA:TC22947_AT Signal recognition particle 68 (Srp68), mRNA mm
MU19KSUBA:TC22947_G_AT Signal recognition particle 68 (Srp68), mRNA mm
RG-U34B:RC_AA944449_AT signal recognition particle (predicted) rn
RAE230A:1371626_AT signal recognition particle (predicted) rn
RAT230_2:1371626_AT signal recognition particle (predicted) rn
RAE230B:1396186_AT Signal recognition particle (predicted) rn
RAT230_2:1396186_AT Signal recognition particle (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01573 Hypothetical protein F55C5.8 [Caenorhabditis elegans] ref|NP_506083.1| F55C5.8 [Caenorhabditis elegans] sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein (SRP68) 0.0
blast CAE75441 Hypothetical protein CBG23435 [Caenorhabditis briggsae] 0.0
blast XP_787477 PREDICTED: similar to signal recognition particle 68kDa [Strongylocentrotus purpuratus] 9.0E-76
Sequence
Target Sequence 
>C. ELEGANS:193397_AT
gatgtttctatatggcttcttcttattctgctcttcataagtacagtgaagccgctgctc
tctttgacagaactgtttctcgagttcaagatgcagaaggaaaacttaagaaattaaaat
cgagctcatttatcaccaatgaaactcaatcgtcattgaatgagctccgatctgaagtgg
aatctgcgaaggttactgtacgagctgctcgtttggcttccgctgctggagatgttaaaa
ccgattcggaacttgccaagattattgataaacgcccacttctggagacagtcaatgaat
ggcgtcaatgggatgttcgtaactccttgaaagataaaaagacaattccagttgccagtt
taccaccagcttttattccaatgccgaacaaacctattttcttcgatttggcaaacttcc
atcttaccatgcccaatgttgatgaccgtcttgaaaaactccaaaaagatcgtgatgcta
ctccaaagaaggcagcgaaaggatcttctgcagcagctgcttcgtcaaaaacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTTCTATATGGCTTCTTCTTA 590 409 1268 Antisense
TAAGTACAGTGAAGCCGCTGCTCTC 471 635 1305 Antisense
GAAGGTTACTGTACGAGCTGCTCGT 227 335 1455 Antisense
TTGGCTTCCGCTGCTGGAGATGTTA 568 703 1480 Antisense
TAAACGCCCACTTCTGGAGACAGTC 375 641 1536 Antisense
GACAATTCCAGTTGCCAGTTTACCA 611 363 1608 Antisense
ACCACCAGCTTTTATTCCAATGCCG 73 87 1629 Antisense
GATTTGGCAAACTTCCATCTTACCA 195 427 1672 Antisense
ACCATGCCCAATGTTGATGACCGTC 354 85 1693 Antisense
AAGGATCTTCTGCAGCAGCTGCTTC 168 161 1766 Antisense
GCAGCTGCTTCGTCAAAAACTTCAA 695 313 1780 Antisense
Sequence Source Affymetrix Proprietary Database