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[193396_s_at] ATP synthase complex f subunit like protein

Description R53.4 /REP_DB=WormBase Gene ID /WP=CE03574 /TR=SW:Q22021 /GB=CAA91350.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP synthase complex f subunit like protein
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 50      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 17      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5376
1 2 3 4 range
A 11811.9
(1.9)
P 		12011.7
(2.1)
P 		12714.3
(3)
P 		7813.8
(-3)
P 		4901
B 10261.9
(0.2)
P 		11878.3
(2)
P 		12774.4
(3)
P 		7398.3
(-3)
P 		5376
C 11078.5
(1.4)
P 		12363.3
(3)
P 		12035
(2.6)
P 		7416
(-3)
P 		4947
avr 11050.8
(1.2) 		12084.4
(2.5) 		12507.9
(3) 		7542.7
(-3) 		4965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6109
1 2 3 4 5 6 range
A 10970.1
(-0.4)
P 		12617.1
(1.3)
P 		13346.1
(2.1)
P 		14254
(3)
P 		8444.4
(-3)
P 		10611.3
(-0.8)
P 		5810
B 10506.9
(-0.6)
P 		10890.1
(-0.2)
P 		13946
(3)
P 		10223.6
(-0.8)
P 		9687
(-1.4)
P 		8144.6
(-3)
P 		5801
C 12524.8
(1)
P 		10175.4
(-2)
P 		13761.6
(2.7)
P 		14028.5
(3)
P 		11923.9
(0.3)
P 		9415.4
(-3)
P 		4613
avr 11333.9
(-0.3) 		11227.5
(-0.4) 		13684.6
(3) 		12835.4
(1.8) 		10018.4
(-2.1) 		9390.4
(-3) 		4294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3157
1 2 3 4 range
A 4300.7
(3)
P 		2607.4
(-0.2)
P 		3323.8
(1.1)
P 		1143.8
(-3)
P 		3157
B 3272.4
(3)
P 		2933.7
(1.8)
P 		2960.1
(1.9)
P 		1576.6
(-3)
P 		1696
C 3667.3
(1.9)
P 		3554.5
(1.7)
P 		4194.6
(3)
P 		1250.5
(-3)
P 		2944
avr 3746.8
(3) 		3031.9
(1.2) 		3492.8
(2.4) 		1323.6
(-3) 		2423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2620
1 2 3 4 5 6 range
A 2022.3
(-3)
P 		4487.3
(3)
P 		2906.5
(-0.8)
P 		3615.2
(0.9)
P 		2548.1
(-1.7)
P 		2583.5
(-1.6)
P 		2465
B 3655.9
(1.6)
P 		3624.9
(1.5)
P 		3386.5
(0.3)
P 		2707.9
(-3)
P 		3935.7
(3)
P 		3037.1
(-1.4)
P 		1228
C 4642.4
(3)
P 		3104.8
(-2.1)
P 		3502.6
(-0.8)
P 		2821.1
(-3)
P 		3858.4
(0.4)
P 		3151.9
(-1.9)
P 		1821
avr 3440.2
(0.8) 		3739
(3) 		3265.2
(-0.5) 		3048.1
(-2.1) 		3447.4
(0.9) 		2924.2
(-3) 		815
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193396_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3186
Sequence Type Exemplar sequence
Representative Public ID R53.4 NCBI
Target Description R53.4 /REP_DB=WormBase Gene ID /WP=CE03574 /TR=SW:Q22021 /GB=CAA91350.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP synthase complex f subunit like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063751 NCBI Caenorhabditis elegans R53.4 (R53.4) mRNA, complete cds. 11/11 None
SNAP00000040702 ENSEMBL cdna:SNAP chromosome:CEL140:II:9967387:9967958:-1 11/11 None
GENEFINDER00000040708 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9963074:9967958:-1 11/11 None
R53.4.1 ENSEMBL cdna:known chromosome:CEL140:II:9967182:9967964:-1 gene:R53.4 11/11 A 
R53.4.2 ENSEMBL cdna:known chromosome:CEL140:II:9967182:9967960:-1 gene:R53.4 11/11 A 
R53.4.3 ENSEMBL cdna:known chromosome:CEL140:II:9967199:9967962:-1 gene:R53.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9967383-9967955(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase complex f subunit like protein
Ensembl R53.4
Entrez Gene 174554 Entrez gene
SwissProt Q22021 EMBL-EBI
WormBase CE03574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91347 Hypothetical protein R53.2 [Caenorhabditis elegans] ref|NP_496151.1| R53.2 [Caenorhabditis elegans] sp|Q22018|DTYMK_CAEEL Probable thymidylate kinase (dTMP kinase) 1.0E-116
blast CAA91350 Hypothetical protein R53.4 [Caenorhabditis elegans] ref|NP_496152.1| R53.4 [Caenorhabditis elegans] sp|Q22021|ATPK_CAEEL Putative ATP synthase f chain, mitochondrial 4.0E-93
blast CAE57948 Hypothetical protein CBG01005 [Caenorhabditis briggsae] 6.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000062 EMBL-EBI Thymidylate kinase 5.2E-79
Sequence
Target Sequence 
>C. ELEGANS:193396_S_AT
caactcagaccatgggttccggacgcgatctttatcccgatctctcgcgccgttgagcgt
gtcggagtgttcttctacaaccgcgtgttgaacaagaccgaggttggattgttcgacaag
agatggaacaagaacgttcacggaccatactgccactggagatactacggaaagcttgat
accaagttcatggatgtgaagctaggagatcttccagcctggatggctcgtcgtgagaag
accccatctgccttctacaacgagttcatgcgcaatatctggagagtccacaacctctat
tactcaggaccagtctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCAGACCATGGGTTCCGGACG 266 187 46 Antisense
GTTGAGCGTGTCGGAGTGTTCTTCT 219 439 97 Antisense
GTTCTTCTACAACCGCGTGTTGAAC 585 443 114 Antisense
GACCGAGGTTGGATTGTTCGACAAG 503 381 141 Antisense
AAGAACGTTCACGGACCATACTGCC 405 151 175 Antisense
GGACCATACTGCCACTGGAGATACT 199 523 187 Antisense
AGCTAGGAGATCTTCCAGCCTGGAT 355 79 245 Antisense
ATCTGCCTTCTACAACGAGTTCATG 4 33 291 Antisense
GTTCATGCGCAATATCTGGAGAGTC 341 445 309 Antisense
GGAGAGTCCACAACCTCTATTACTC 634 515 326 Antisense
CTCTATTACTCAGGACCAGTCTACA 526 229 340 Antisense
Sequence Source Affymetrix Proprietary Database