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[193395_at] S.pombe hypothetical protein C12G12.13C like

Description ZK858.1 /REP_DB=WormBase Gene ID /WP=CE15421 /TR=Q94419 /GB=CAB02138.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C12G12.13C like
Cluster 6grp_total > 37      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 96.9
(-2.2)
P 		92.9
(-3)
A 		104.6
(-0.6)
A 		122.6
(3)
A 		30
B 105.9
(0)
P 		90.7
(-3)
P 		121
(3)
P 		100.5
(-1.1)
A 		30
C 112.3
(0.2)
P 		132.6
(3)
P 		89.8
(-3)
P 		99.4
(-1.7)
A 		43
avr 105
(-3) 		105.4
(-2) 		105.1
(-2.8) 		107.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 101.1
(3)
A 		92.4
(2)
P 		49.8
(-3)
A 		68.4
(-0.8)
P 		85.2
(1.1)
A 		83.3
(0.9)
P 		51
B 80.5
(-0.9)
P 		82.9
(-0.6)
A 		62.9
(-3)
M 		96.1
(0.9)
A 		73.2
(-1.8)
P 		113.7
(3)
P 		51
C 109.4
(1.8)
P 		120.7
(3)
A 		74.4
(-1.9)
A 		80.5
(-1.3)
A 		65.8
(-2.8)
P 		64.3
(-3)
P 		56
avr 97
(2.7) 		98.7
(3) 		62.4
(-3) 		81.7
(0.2) 		74.7
(-1) 		87.1
(1.1) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 35.3
(3)
P 		20.2
(-2.2)
A 		27.3
(0.2)
A 		17.9
(-3)
A 		17
B 33.8
(3)
P 		22.4
(-2.5)
P 		28
(0.2)
P 		21.4
(-3)
A 		12
C 37.2
(2.7)
P 		38.1
(3)
P 		31.3
(1.1)
P 		16.8
(-3)
A 		21
avr 35.4
(3) 		26.9
(-0.1) 		28.9
(0.7) 		18.7
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 18.6
(-0.9)
A 		32.9
(3)
P 		10.8
(-3)
A 		17.4
(-1.2)
P 		25.7
(1)
A 		20.3
(-0.4)
P 		22
B 28
(-0.2)
P 		27.6
(-0.3)
A 		15.3
(-3)
M 		25.5
(-0.7)
A 		29.7
(0.2)
P 		42.4
(3)
P 		27
C 40.5
(3)
P 		36.8
(2.1)
A 		18.9
(-2.3)
A 		16.2
(-3)
A 		21.3
(-1.7)
P 		21.5
(-1.7)
P 		24
avr 29
(1.8) 		32.4
(3) 		15
(-3) 		19.7
(-1.4) 		25.6
(0.7) 		28.1
(1.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1524
Sequence Type Exemplar sequence
Representative Public ID ZK858.1 NCBI
Target Description ZK858.1 /REP_DB=WormBase Gene ID /WP=CE15421 /TR=Q94419 /GB=CAB02138.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C12G12.13C like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060045 NCBI Caenorhabditis elegans ZK858.1 (ZK858.1) mRNA, complete cds. 11/11 None
SNAP00000011872 ENSEMBL cdna:SNAP chromosome:CEL140:I:9126239:9129368:1 11/11 None
GENEFINDER00000011881 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9126239:9129368:1 11/11 None
ZK858.1 ENSEMBL cdna:known chromosome:CEL140:I:9126239:9129368:1 gene:ZK858.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9126244-9129299(+) 100.0 100.0
Public Domain and Genome References
Gene Title S.pombe hypothetical protein C12G12.13C like
Ensembl ZK858.1
Entrez Gene 172735 Entrez gene
SwissProt Q94419 EMBL-EBI
WormBase CE34234 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02138 Hypothetical protein ZK858.1 [Caenorhabditis elegans] ref|NP_492446.2| ZK858.1 [Caenorhabditis elegans] 0.0
blast CAE67040 Hypothetical protein CBG12446 [Caenorhabditis briggsae] 0.0
blast AAS65290 CG11265-PE, isoform E [Drosophila melanogaster] gb|AAQ23600.1| RE04457p [Drosophila melanogaster] ref|NP_996381.1| CG11265-PE, isoform E [Drosophila melanogaster] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002934 EMBL-EBI DNA polymerase, beta-like region 2.2E-14
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 2.3E-21
Pfam IPR002934 EMBL-EBI DNA polymerase, beta-like region 2.2E-14
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 2.3E-21
Pfam IPR002934 EMBL-EBI DNA polymerase, beta-like region 1.3E-16
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 2.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492446.2 1 216-238
ZK858.1 1 216-238
SNAP00000011872 1 241-263
Sequence
Target Sequence 
>C. ELEGANS:193395_AT
gcagcgtccttcaattcgtaatctttcacaaggctctgatgggtcagatgaatacaatgt
tgaatcatggaacaacaatataagacaaggaagaagagcctcgtcgaattcaccaagtcc
atccagacagcagacgaatactagaaattgtggacccactaataatattccctacgattc
atttcgctcacaaaacaagaattcgacgttagatggttcgaataattcatcagaagagcc
aataacaatgtatgccgatgttgttaaaaagaagtcttcgattacaacatcaaccaatac
ttccactgcagatgtcaacgtcaccaatggaaatccaatacccgcaaatggaataattcc
acaatctatggccgtggtcaacgttggaagaggatcctatagaaatgctcttacaacttc
ccccatgacgcctccatcagcacatacttcaatgcagaagcaacatcatttgcgtaaaga
taacgaatgtggtttcgacaacaactcagccacttcttctactgatttaagccatcatca
accacaattggttccaccggtaagcaccagggctgagcagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCGTCCTTCAATTCGTAATCTT 116 315 1947 Antisense
AAGAAGAGCCTCGTCGAATTCACCA 611 151 2037 Antisense
TCACCAAGTCCATCCAGACAGCAGA 654 625 2056 Antisense
TATTCCCTACGATTCATTTCGCTCA 38 665 2112 Antisense
AACCAATACTTCCACTGCAGATGTC 193 147 2238 Antisense
TGCAGATGTCAACGTCACCAATGGA 243 579 2253 Antisense
AATCTATGGCCGTGGTCAACGTTGG 531 161 2309 Antisense
TGGTTTCGACAACAACTCAGCCACT 570 551 2436 Antisense
CAGCCACTTCTTCTACTGATTTAAG 142 203 2453 Antisense
GATTTAAGCCATCATCAACCACAAT 313 427 2470 Antisense
GGTAAGCACCAGGGCTGAGCAGCAG 434 503 2505 Antisense
Sequence Source Affymetrix Proprietary Database