[Home] | [Total List]

[193394_at] D-beta-hydroxybutyrate dehydrogenase (BDH)

Description F55E10.6 /REP_DB=WormBase Gene ID /WP=CE02786 /TR=Q20840 /GB=AAC46535.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=D-beta-hydroxybutyrate dehydrogenase (BDH)
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_high_8_8 > 49      6grp_highest_nonorm > 52      6grp_total > 51      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 919
1 2 3 4 range
A 982.5
(3)
P 		474.9
(-0.3)
P 		467.8
(-0.4)
P 		68.8
(-3)
A 		914
B 969.6
(3)
P 		554.3
(0.2)
P 		502.1
(-0.2)
P 		86.1
(-3)
A 		884
C 934.2
(3)
P 		607.6
(0.7)
P 		579.9
(0.6)
P 		63.6
(-3)
P 		871
avr 962.1
(3) 		545.6
(0.2) 		516.6
(-0) 		72.8
(-3) 		889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 651
1 2 3 4 5 6 range
A 625
(0.9)
P 		538.6
(0.1)
P 		855.1
(3)
P 		816.5
(2.6)
P 		542.9
(0.1)
P 		204.4
(-3)
P 		651
B 672.8
(2.2)
P 		513.6
(0.3)
P 		739.9
(3)
P 		683.4
(2.3)
P 		463.6
(-0.2)
P 		229.3
(-3)
P 		511
C 675.6
(1.9)
P 		503.8
(-0)
P 		732.3
(2.6)
P 		769
(3)
P 		441.5
(-0.7)
P 		244.7
(-3)
P 		524
avr 657.8
(1.7) 		518.7
(0.2) 		775.8
(3) 		756.3
(2.8) 		482.7
(-0.2) 		226.1
(-3) 		550
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 357.7
(3)
P 		103.1
(-1.4)
P 		122.3
(-1.1)
P 		10.1
(-3)
A 		348
B 309.2
(3)
P 		136.9
(-0.6)
P 		116.3
(-1)
P 		18.3
(-3)
A 		291
C 309.2
(3)
P 		174.7
(0.3)
P 		202.1
(0.8)
P 		10.7
(-3)
P 		299
avr 325.4
(3) 		138.2
(-0.6) 		146.9
(-0.4) 		13
(-3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 115.2
(-0.5)
P 		191.6
(2.4)
P 		186.2
(2.2)
P 		207.1
(3)
P 		163.8
(1.3)
P 		49.8
(-3)
P 		157
B 234.1
(3)
P 		170.9
(0.4)
P 		179.7
(0.8)
P 		181
(0.9)
P 		188.4
(1.2)
P 		85.5
(-3)
P 		149
C 250.4
(3)
P 		153.7
(-0.4)
P 		186.4
(0.7)
P 		154.6
(-0.4)
P 		142.9
(-0.8)
P 		81.9
(-3)
P 		169
avr 199.9
(3) 		172.1
(1.7) 		184.1
(2.3) 		180.9
(2.1) 		165
(1.4) 		72.4
(-3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16077
Sequence Type Exemplar sequence
Representative Public ID F55E10.6 NCBI
Target Description F55E10.6 /REP_DB=WormBase Gene ID /WP=CE02786 /TR=Q20840 /GB=AAC46535.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=D-beta-hydroxybutyrate dehydrogenase (BDH)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077014 NCBI Caenorhabditis elegans F55E10.6 (F55E10.6) mRNA, complete cds. 11/11 None
SNAP00000011818 ENSEMBL cdna:SNAP chromosome:CEL140:X:8344814:8346280:-1 11/11 None
GENEFINDER00000011820 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8344814:8346280:-1 11/11 None
F55E10.6 ENSEMBL cdna:known chromosome:CEL140:X:8344814:8346280:-1 gene:F55E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8344812-8346279(-) 100.0 100.0
Public Domain and Genome References
Gene Title D-beta-hydroxybutyrate dehydrogenase (BDH)
Ensembl F55E10.6
Entrez Gene 186315 Entrez gene
SwissProt Q20840 EMBL-EBI
WormBase CE02786 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOUSE430_2:1451681_AT cDNA sequence BC089597 mm
MOE430A:1451681_AT cDNA sequence BC089597 mm
MOUSE430A_2:1451681_AT cDNA sequence BC089597 mm
MU11KSUBB:MSA.36978.0_F_AT cDNA sequence BC089597 mm
MG-U74BV2:112751_S_AT cDNA sequence BC089597 mm
MU19KSUBB:TC26014_AT CDNA sequence BC089597 (BC089597), mRNA mm
MU19KSUBC:TC36652_AT CDNA sequence BC089597 (BC089597), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46535 Hypothetical protein F55E10.6 [Caenorhabditis elegans] ref|NP_509415.1| F55E10.6 [Caenorhabditis elegans] 1.0E-178
blast AAC46535 Hypothetical protein F55E10.6 [Caenorhabditis elegans] ref|NP_509415.1| F55E10.6 [Caenorhabditis elegans] 1.0E-176
blast AAC46535 Hypothetical protein F55E10.6 [Caenorhabditis elegans] ref|NP_509415.1| F55E10.6 [Caenorhabditis elegans] 1.0E-173
blast CAE74886 Hypothetical protein CBG22749 [Caenorhabditis briggsae] 1.0E-161
blast CAE74886 Hypothetical protein CBG22749 [Caenorhabditis briggsae] 1.0E-154
blast CAE74886 Hypothetical protein CBG22749 [Caenorhabditis briggsae] 1.0E-151
blast AAB54122 Dehydrogenases, short chain protein 2, isoform a [Caenorhabditis elegans] ref|NP_491575.1| DeHydrogenases, Short chain family member (dhs-2) [Caenorhabditis elegans] 2.0E-61
blast AAB54122 Dehydrogenases, short chain protein 2, isoform a [Caenorhabditis elegans] ref|NP_491575.1| DeHydrogenases, Short chain family member (dhs-2) [Caenorhabditis elegans] 3.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.5E-24
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.5E-24
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011818 2 5-27,280-299
GENEFINDER00000011820 2 5-27,289-308
Sequence
Target Sequence 
>C. ELEGANS:193394_AT
ggtccagacgattggctttctgcacaagattatatcaatacaatgcaagtgaatactttc
ggagtcatgcgatttattcaaggactcaaaaagtttgtaaagaagcaggaaggaagagtt
gtcattatctcatcaatctctggtcgaactcctcgtccaactgtcggtccttactgcgtc
tcaaagcatgctgtggaagcatacgcagatgttatcagacacgaattaattgatttcaat
gtctccgtgcatttattggagcctggcttcttcaccacaaacattacacaaaccgctaca
aatgatttggacgcggtttgggaacgactagacgacgaaacaaagaaggagtatggaaaa
gagttttatgatgattacaagaattcccgattctctcgtctatcccactgcgctgatgat
ctaaacccagttattgatgcatatgatcatgctctgcttggaaaatacccaaaaactaga
tactgggttggctgggacaccattctgttttacattcctctggcaacacttccaactttt
gctcaagattggttcatttcatttcagcgttgtagccggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCCAGACGATTGGCTTTCTGCAC 690 501 319 Antisense
ATCTCATCAATCTCTGGTCGAACTC 355 31 445 Antisense
GTCCTTACTGCGTCTCAAAGCATGC 378 477 485 Antisense
GTGCATTTATTGGAGCCTGGCTTCT 315 481 565 Antisense
CTGGCTTCTTCACCACAAACATTAC 223 241 581 Antisense
ACAAGAATTCCCGATTCTCTCGTCT 528 113 695 Antisense
TATCCCACTGCGCTGATGATCTAAA 128 659 719 Antisense
TACTGGGTTGGCTGGGACACCATTC 615 647 799 Antisense
GACACCATTCTGTTTTACATTCCTC 515 367 814 Antisense
GGCAACACTTCCAACTTTTGCTCAA 456 535 840 Antisense
TTTCATTTCAGCGTTGTAGCCGGCC 582 671 875 Antisense
Sequence Source Affymetrix Proprietary Database