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[193393_at] bone morphogenetic protein like

Description C53D6.2 /REP_DB=WormBase Gene ID /WP=CE24863 /GEN=unc-129 /TR=O44371 /GB=CAB61007.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bone morphogenetic protein like
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 36      6grp_highest_sub > 02      6grp_cgc > 72      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 549.3
(2.9)
P 		552.7
(3)
P 		346.6
(-2.5)
P 		327.4
(-3)
P 		225
B 596
(1.3)
P 		677.2
(3)
P 		396.1
(-3)
P 		468.6
(-1.5)
P 		281
C 625
(3)
P 		622.4
(2.9)
P 		441
(-3)
P 		625.6
(3)
P 		185
avr 590.1
(2.3) 		617.4
(3) 		394.6
(-3) 		473.9
(-0.9) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 502.7
(-1.2)
P 		824.3
(1.4)
P 		1027.4
(3)
P 		530.5
(-1)
P 		299.2
(-2.8)
P 		276.3
(-3)
P 		751
B 717.9
(0)
P 		1004.4
(3)
P 		765.6
(0.5)
P 		529.3
(-2)
P 		428.9
(-3)
P 		518.2
(-2.1)
P 		576
C 750.8
(1.3)
P 		919.1
(3)
P 		544.5
(-0.8)
P 		624
(0)
P 		327.2
(-3)
P 		448.4
(-1.8)
P 		592
avr 657.1
(0.2) 		915.9
(3) 		779.2
(1.5) 		561.3
(-0.8) 		351.8
(-3) 		414.3
(-2.3) 		564
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 200
(3)
P 		120
(-0.2)
P 		90.6
(-1.3)
P 		47.9
(-3)
P 		152
B 190
(3)
P 		167.3
(1.6)
P 		91.8
(-3)
P 		99.9
(-2.5)
P 		98
C 206.9
(3)
P 		178.9
(1.3)
P 		153.7
(-0.1)
P 		105.5
(-3)
P 		101
avr 199
(3) 		155.4
(0.7) 		112
(-1.6) 		84.4
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 92.7
(-2.3)
P 		293.2
(3)
P 		223.8
(1.2)
P 		134.5
(-1.2)
P 		90.3
(-2.4)
P 		67.3
(-3)
P 		226
B 249.8
(0.4)
P 		334.3
(3)
P 		185.9
(-1.6)
P 		140.2
(-3)
P 		174.3
(-1.9)
P 		193.2
(-1.4)
P 		194
C 278.3
(2.9)
P 		280.4
(3)
P 		138.6
(-1.9)
P 		125.5
(-2.3)
P 		105.9
(-3)
P 		150.1
(-1.5)
P 		175
avr 206.9
(-0.2) 		302.6
(3) 		182.8
(-1) 		133.4
(-2.7) 		123.5
(-3) 		136.9
(-2.6) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9325
Sequence Type Exemplar sequence
Representative Public ID C53D6.2 NCBI
Target Description C53D6.2 /REP_DB=WormBase Gene ID /WP=CE24863 /GEN=unc-129 /TR=O44371 /GB=CAB61007.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bone morphogenetic protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069165 NCBI Caenorhabditis elegans UNCoordinated family member (unc-129) (unc-129) mRNA, complete cds. 11/11 None
SNAP00000020661 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9003100:9005365:-1 11/11 None
GENEFINDER00000020678 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9003100:9005954:-1 11/11 None
C53D6.2 ENSEMBL cdna:known chromosome:CEL140:IV:9002824:9005390:-1 gene:C53D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9003105-9005371(-) 100.0 100.0
Public Domain and Genome References
Gene Title bone morphogenetic protein like
Gene Symbol unc-129
Ensembl C53D6.2
Entrez Gene 177719 Entrez gene
SwissProt O44371 EMBL-EBI
WormBase CE24863 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61007 Hypothetical protein C53D6.2 [Caenorhabditis elegans] ref|NP_501566.1| UNCoordinated family member (unc-129) [Caenorhabditis elegans] gb|AAC48376.1| UNC-129 [Caenorhabditis elegans] 0.0
blast T20192 hypothetical protein C53D6.2 - Caenorhabditis elegans 0.0
blast CAE74086 Hypothetical protein CBG21741 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001839 EMBL-EBI Transforming growth factor beta 4.0E-19
Pfam IPR001839 EMBL-EBI Transforming growth factor beta 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:193393_AT
gtacaccattccttgtgatttattctaaagttaatcatactctggatactgtatcagtta
tgaaacaaactgaacagacaaaaagaaagagaagagatttgggaaatgaagaattgagag
aatattataattataactcgattccattggataatgatgatcgtgagccaataaagagaa
agaatggaaaaaagaacagtttatctgaggaaatttcatcagaagatgtttggcaaggtt
ttggagaagagacttcaagagaagaaagagaaagaattgcaaatgaagaactggctaatg
atgttcgagttgtgcttttgcaaaataaaaatcgttgtcacaaagagggagttctggtta
gtttgaagcattttggatgggatcgttatgtcattgaaccaaaaacaattgaaacatcat
tctgtaaaggaaagtgtgcgaaaccaatgttaacgagtggaaaagcttcaaatcatgcta
tgcttcaatcattgtttgctgcggaaccagtttgttgtgctccaactaatttgaaatcct
tgaacttttggtacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACACCATTCCTTGTGATTTATTC 329 461 611 Antisense
ATCATACTCTGGATACTGTATCAGT 154 31 644 Antisense
AATTATAACTCGATTCCATTGGATA 503 173 739 Antisense
ATGATGTTCGAGTTGTGCTTTTGCA 149 47 908 Antisense
GAGGGAGTTCTGGTTAGTTTGAAGC 385 401 955 Antisense
GATGGGATCGTTATGTCATTGAACC 455 407 986 Antisense
GCTTCAAATCATGCTATGCTTCAAT 557 305 1075 Antisense
GCTTCAATCATTGTTTGCTGCGGAA 303 305 1092 Antisense
GCGGAACCAGTTTGTTGTGCTCCAA 272 293 1111 Antisense
GTGCTCCAACTAATTTGAAATCCTT 631 477 1127 Antisense
GAAATCCTTGAACTTTTGGTACAGA 40 359 1143 Antisense
Sequence Source Affymetrix Proprietary Database