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[193392_at] EF-hand calcium binding protein

Description C24H10.5 /REP_DB=WormBase Gene ID /WP=CE04070 /GEN=uvt-2 /TR=Q18136 /GB=AAA81454.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=EF-hand calcium binding protein
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 56      6grp_total > 55      4grp_total > 61      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1851
1 2 3 4 range
A 2447.1
(3)
P 		1618.2
(0.3)
P 		1749.4
(0.7)
P 		596.4
(-3)
P 		1851
B 1761.1
(3)
P 		1635.2
(2.3)
P 		1695.4
(2.7)
P 		625.5
(-3)
P 		1136
C 1835.4
(2.8)
P 		1574.2
(1.5)
P 		1868.1
(3)
P 		683.3
(-3)
P 		1185
avr 2014.5
(3) 		1609.2
(1.2) 		1771
(1.9) 		635.1
(-3) 		1379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1524
1 2 3 4 5 6 range
A 1991.1
(3)
P 		1701.3
(-2.3)
P 		1663.1
(-3)
P 		1678.7
(-2.7)
P 		1864.5
(0.7)
P 		1971.5
(2.6)
P 		328
B 2541.6
(1.5)
P 		2450.1
(1)
P 		2868.4
(3)
P 		1970.4
(-1.2)
P 		1581.6
(-3)
P 		2399.2
(0.8)
P 		1287
C 1344.4
(-3)
P 		2543.8
(2.6)
P 		2104.8
(0.6)
P 		1847.4
(-0.6)
P 		1586.8
(-1.9)
P 		2625.4
(3)
P 		1281
avr 1959
(-0.4) 		2231.7
(2.1) 		2212.1
(1.9) 		1832.2
(-1.6) 		1677.6
(-3) 		2332
(3) 		654
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 891
(3)
P 		351.3
(-1)
P 		457.3
(-0.2)
P 		87.3
(-3)
P 		804
B 561.6
(3)
P 		403.9
(0.8)
P 		392.9
(0.6)
P 		133.3
(-3)
P 		428
C 607.6
(2.5)
P 		452.6
(0.8)
P 		651.1
(3)
P 		115.2
(-3)
P 		536
avr 686.7
(3) 		402.6
(0) 		500.4
(1.1) 		111.9
(-3) 		575

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 367
(-2.9)
P 		605.1
(3)
P 		362.2
(-3)
P 		425.8
(-1.4)
P 		562.6
(2)
P 		480
(-0.1)
P 		243
B 884.4
(2.8)
P 		815.5
(1.7)
P 		696.5
(-0.2)
P 		521.9
(-3)
P 		642.6
(-1.1)
P 		894.6
(3)
P 		373
C 498.3
(-1.5)
P 		776.2
(1.8)
P 		535.7
(-1.1)
P 		371.5
(-3)
P 		513.5
(-1.3)
P 		878.9
(3)
P 		507
avr 583.2
(-0.2) 		732.3
(2.6) 		531.5
(-1.2) 		439.7
(-3) 		572.9
(-0.4) 		751.2
(3) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16052
Sequence Type Exemplar sequence
Representative Public ID C24H10.5 NCBI
Target Description C24H10.5 /REP_DB=WormBase Gene ID /WP=CE04070 /GEN=uvt-2 /TR=Q18136 /GB=AAA81454.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=EF-hand calcium binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076463 NCBI Caenorhabditis elegans Unidentified Vitellogenin-linked Transcript family member (uvt-2) (uvt-2) mRNA, complete cds. 11/11 None
GENEFINDER00000004810 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5074463:5076677:-1 10/11 None
SNAP00000004805 ENSEMBL cdna:SNAP chromosome:CEL140:X:5074777:5077825:-1 11/11 None
C24H10.5 ENSEMBL cdna:known chromosome:CEL140:X:5074311:5077896:-1 gene:C24H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5074844-5077826(-) 98.23 100.0
Public Domain and Genome References
Gene Title EF-hand calcium binding protein
Gene Symbol uvt-2
Ensembl C24H10.5
Entrez Gene 192083 Entrez gene
SwissProt Q18136 EMBL-EBI
WormBase CE29674 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260076_AT calcium-binding protein, putative at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81454 Unidentified vitellogenin-linked transcript protein 2 [Caenorhabditis elegans] ref|NP_508864.2| Unidentified Vitellogenin-linked Transcript family member (uvt-2) [Caenorhabditis elegans] 5.0E-86
blast CAE68689 Hypothetical protein CBG14603 [Caenorhabditis briggsae] 7.0E-83
blast AAA81454 Unidentified vitellogenin-linked transcript protein 2 [Caenorhabditis elegans] ref|NP_508864.2| Unidentified Vitellogenin-linked Transcript family member (uvt-2) [Caenorhabditis elegans] 5.0E-72
blast CAE68689 Hypothetical protein CBG14603 [Caenorhabditis briggsae] 3.0E-69
blast AAF26959 putative calmodulin [Arabidopsis thaliana] gb|AAL90989.1| AT3g03000/F13E7_5 [Arabidopsis thaliana] gb|AAK73960.1| AT3g03000/F13E7_5 [Arabidopsis thaliana] ref|NP_186950.1| calmodulin, putative [Arabidopsis thaliana] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.1E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.3E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.5E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.7E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.1E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.3E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.5E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0013
Sequence
Target Sequence 
>C. ELEGANS:193392_AT
gcgcctgctgctcttcaaagaagaagaatcagggagaagttggagagattcgagaggatg
atttgaagggaatttttagagagttcgatctcaacggagatggatacattcaaagggaag
aactgcgcgctgtcatgcaaaaaatgggacagtctccaacggaagacgagctcgacgcaa
tgttccaggccgctgacaaggattgtgatggaaatattgatttccaagaattccttgtaa
tcgccaaagcgaacccactttcgctttcattgaaggctgtttttgaggagttggatgttg
acggagatggttacataacaagatccgaattacgcactgccttccaaagaatggggcact
ctctttccgatcaggatatcaaggccatttataggcacgtcgatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCCTGCTGCTCTTCAAAGAAGAA 681 287 17 Antisense
AAAGGGAAGAACTGCGCGCTGTCAT 631 119 128 Antisense
GGGACAGTCTCCAACGGAAGACGAG 600 493 162 Antisense
AAGACGAGCTCGACGCAATGTTCCA 271 153 179 Antisense
CAATGTTCCAGGCCGCTGACAAGGA 461 181 194 Antisense
GAATTCCTTGTAATCGCCAAAGCGA 669 323 244 Antisense
AAGCGAACCCACTTTCGCTTTCATT 418 149 263 Antisense
ACAAGATCCGAATTACGCACTGCCT 564 111 334 Antisense
TACGCACTGCCTTCCAAAGAATGGG 31 649 347 Antisense
GCACTCTCTTTCCGATCAGGATATC 16 317 372 Antisense
GCCATTTATAGGCACGTCGATCAAA 603 279 400 Antisense
Sequence Source Affymetrix Proprietary Database