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[193391_at]

Description ZK858.4 /REP_DB=WormBase Gene ID /WP=CE15427 /GEN=mel-26 /TR=Q94420 /GB=CAB02139.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=kruppel-like zinc-finger protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 95      6grp_total > 69      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1101
1 2 3 4 range
A 482.6
(-1.8)
P 		376
(-2.6)
P 		318.9
(-3)
P 		1133.4
(3)
P 		815
B 569.8
(-1.3)
P 		265.7
(-3)
P 		271.6
(-3)
P 		1366.8
(3)
P 		1101
C 548.9
(-1.1)
P 		292.8
(-3)
P 		423.9
(-2)
P 		1089.5
(3)
P 		797
avr 533.8
(-1.5) 		311.5
(-3) 		338.1
(-2.8) 		1196.6
(3) 		885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1001
1 2 3 4 5 6 range
A 355.1
(-3)
P 		676.6
(1)
P 		489.5
(-1.3)
P 		469.7
(-1.6)
P 		632.6
(0.5)
P 		835.3
(3)
P 		480
B 746.8
(-0.2)
P 		683
(-0.7)
P 		483.1
(-2.2)
P 		368.3
(-3)
P 		500.2
(-2)
P 		1189.9
(3)
P 		822
C 846.7
(-0.2)
P 		562.6
(-2)
P 		508.2
(-2.3)
P 		398.9
(-3)
P 		690.9
(-1.2)
P 		1356.5
(3)
P 		958
avr 649.5
(-1) 		640.7
(-1.1) 		493.6
(-2.3) 		412.3
(-3) 		607.9
(-1.4) 		1127.2
(3) 		715
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 175.7
(3)
P 		81.6
(-3)
P 		83.4
(-2.9)
P 		165.9
(2.4)
P 		94
B 181.7
(0.1)
P 		65.6
(-2.9)
P 		62.9
(-3)
P 		291.3
(3)
P 		228
C 181.7
(2.9)
P 		84.2
(-3)
P 		147.7
(0.8)
P 		183.7
(3)
P 		100
avr 179.7
(1.5) 		77.1
(-3) 		98
(-2.1) 		213.6
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 65.5
(-3)
P 		240.6
(3)
P 		106.6
(-1.6)
P 		119.1
(-1.2)
P 		190.9
(1.3)
P 		203.4
(1.7)
P 		175
B 259.9
(-0.2)
P 		227.3
(-0.8)
P 		117.3
(-2.7)
P 		97.6
(-3)
P 		203.2
(-1.2)
P 		443.7
(3)
P 		346
C 313.8
(0.7)
P 		171.7
(-1.5)
P 		129.3
(-2.2)
P 		80.2
(-3)
P 		223.6
(-0.7)
P 		454.1
(3)
P 		374
avr 213.1
(-0.4) 		213.2
(-0.4) 		117.7
(-2.6) 		99
(-3) 		205.9
(-0.6) 		367.1
(3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1848
Sequence Type Exemplar sequence
Representative Public ID ZK858.4 NCBI
Target Description ZK858.4 /REP_DB=WormBase Gene ID /WP=CE15427 /GEN=mel-26 /TR=Q94420 /GB=CAB02139.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=kruppel-like zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060048
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011880 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9140667:9143366:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060048 7/11 Cross Hyb Matching Probes A 
SNAP00000011876 7/11 Cross Hyb Matching Probes None
ZK858.4 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9140597-9143297(+) 99.48 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02139 Hypothetical protein ZK858.4 [Caenorhabditis elegans] ref|NP_492449.2| Maternal Effect Lethal family member (mel-26) [Caenorhabditis elegans] gb|AAC63596.1| MEL-26 [Caenorhabditis elegans] 0.0
blast CAE67044 Hypothetical protein CBG12451 [Caenorhabditis briggsae] 0.0
blast AAH71125 MGC81433 protein [Xenopus laevis] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.4E-11
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.5E-30
Sequence
Target Sequence 
>C. ELEGANS:193391_AT
tggcaactgctttgctcattgctgccgataaatatcgattggaagaattgaaaagtcatt
gtgaaaagtatttggttgagaatatcaatatcgagaatgcgtgtagtcttttgattattg
gtgatctctattcggcgccaaagttgagaaaacgagctgttacgttttgtattgctacta
cctgcaaatttgctgagaagttcgatttacgaaaaaaattcataaaccaacttgattgca
tctttttttttgagtcgcttttacagtacatcctggcacgaccaaagaatgttactggaa
cacctggatgggaagatatactcaaaggtcatccaaatctcataactgatatttttagtc
agattgatcgacagtcatcaacgggcgcaacatcatcagtttcaaatctaccaggcgttc
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCAACTGCTTTGCTCATTGCTGC 241 547 887 Antisense
GAATGCGTGTAGTCTTTTGATTATT 310 331 981 Antisense
ATTGGTGATCTCTATTCGGCGCCAA 234 5 1003 Antisense
TACGTTTTGTATTGCTACTACCTGC 158 647 1047 Antisense
AAACCAACTTGATTGCATCTTTTTT 463 125 1110 Antisense
TTTGAGTCGCTTTTACAGTACATCC 499 667 1135 Antisense
CAGTACATCCTGGCACGACCAAAGA 554 207 1150 Antisense
GTTACTGGAACACCTGGATGGGAAG 110 445 1177 Antisense
AAAGGTCATCCAAATCTCATAACTG 282 121 1210 Antisense
AGTCATCAACGGGCGCAACATCATC 568 59 1259 Antisense
GTTTCAAATCTACCAGGCGTTCCAA 264 447 1285 Antisense
Sequence Source Affymetrix Proprietary Database