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[193390_at] 4-hydroxyphenylpyruvate dioxygenase (4HPPD)

Description C31H2.3 /REP_DB=WormBase Gene ID /WP=CE04131 /TR=Q18346 /GB=AAA83337.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=4-hydroxyphenylpyruvate dioxygenase (4HPPD)
Cluster 6grp_high1_10_10 > 28      4grp_high_8_8 > 19      6grp_total > 28      4grp_total > 21      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 222.5
(0.8)
P
185.9
(-0.1)
P
66.5
(-3)
A
314.1
(3)
P
248
B 230.3
(0.1)
P
115.7
(-2.3)
P
79.9
(-3)
P
368.4
(3)
P
289
C 233.4
(3)
P
171.9
(0.4)
P
88.7
(-3)
P
212.1
(2.1)
P
145
avr 228.7
(1.1)
157.8
(-0.8)
78.4
(-3)
298.2
(3)
220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 150.1
(3)
P
95.1
(-1.4)
P
84.2
(-2.2)
P
74.4
(-3)
M
92.5
(-1.6)
P
92.1
(-1.6)
P
76
B 180.4
(3)
P
116.1
(-0.1)
P
56.9
(-3)
P
77.5
(-2)
P
70.3
(-2.3)
P
79.3
(-1.9)
P
124
C 184.9
(3)
P
111.4
(-0.3)
P
94.7
(-1.1)
P
53.2
(-3)
A
111
(-0.4)
P
112.1
(-0.3)
P
132
avr 171.8
(3)
107.5
(-0.7)
78.6
(-2.4)
68.4
(-3)
91.3
(-1.7)
94.5
(-1.5)
103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 81
(3)
P
40.4
(-0.8)
P
17.4
(-3)
A
46
(-0.3)
P
64
B 73.4
(2.5)
P
28.6
(-2)
P
18.5
(-3)
P
78.5
(3)
P
60
C 77.3
(3)
P
49.4
(-0.6)
P
30.9
(-3)
P
35.8
(-2.4)
P
46
avr 77.2
(3)
39.5
(-1.1)
22.3
(-3)
53.4
(0.4)
55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 27.7
(0.6)
P
33.8
(3)
P
18.3
(-3)
P
18.9
(-2.8)
M
27.9
(0.7)
P
22.4
(-1.4)
P
16
B 62.8
(3)
P
38.7
(0)
P
13.8
(-3)
P
20.5
(-2.2)
P
28.6
(-1.2)
P
29.6
(-1.1)
P
49
C 68.5
(3)
P
34
(-0.6)
P
24.1
(-1.6)
P
10.7
(-3)
A
35.9
(-0.4)
P
37.5
(-0.2)
P
58
avr 53
(3)
35.5
(0.1)
18.7
(-2.7)
16.7
(-3)
30.8
(-0.7)
29.8
(-0.8)
36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16133
Sequence Type Exemplar sequence
Representative Public ID C31H2.3 NCBI
Target Description C31H2.3 /REP_DB=WormBase Gene ID /WP=CE04131 /TR=Q18346 /GB=AAA83337.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=4-hydroxyphenylpyruvate dioxygenase (4HPPD)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076473(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_076473 NCBI Caenorhabditis elegans C31H2.3 (C31H2.3) mRNA, complete cds. 11/11 None
SNAP00000008496 ENSEMBL cdna:SNAP chromosome:CEL140:X:5151514:5153039:-1 10/11 None
GENEFINDER00000008498 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5151514:5154366:-1 11/11 None
C31H2.3 ENSEMBL cdna:known chromosome:CEL140:X:5151514:5154366:-1 gene:C31H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5151514-5154367(-) 100.0 100.0
Public Domain and Genome References
Gene Title 4-hydroxyphenylpyruvate dioxygenase (4HPPD)
Ensembl C31H2.3
Entrez Gene 183100 Entrez gene
SwissProt Q18346 EMBL-EBI
WormBase CE35417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83337 Hypothetical protein C31H2.3 [Caenorhabditis elegans] ref|NP_508874.2| C31H2.3 [Caenorhabditis elegans] 1.0E-115
blast AAA83337 Hypothetical protein C31H2.3 [Caenorhabditis elegans] ref|NP_508874.2| C31H2.3 [Caenorhabditis elegans] 1.0E-78
blast CAE68700 Hypothetical protein CBG14619 [Caenorhabditis briggsae] 3.0E-54
blast CAE68700 Hypothetical protein CBG14619 [Caenorhabditis briggsae] 7.0E-54
Sequence
Target Sequence
>C. ELEGANS:193390_AT
acagcaacatgcctttcagcgagtgattgcctaagtgacatacaaatggagggcagtagc
ccaattgctccccaccgtggtttcaacagaaaagcgcgagttactcttctcgataagact
gaaatcgacagagtgatgccaaagtcttcgagcgagttcgacattcgcaagaaactcaac
agcatggcgagccgtaagaaggacagcagcgatagctctccgaaaagccagtgctcagtg
agctcaattcctgagcatcctactttcgatagtatcggtgagcgtccaaacgtgaagaaa
catatgaaacttggagatcttggaaaaactcgttcatgcgttgagctgaaaactaacgat
aaacgacttttacgcacgttccaagaggacaacataatcaagatgccaagcatggattca
gatattggggacgatcatgtcactggtgtcaatgatctatgcctcagttttgaaggtctc
ggaaagtctctcatatactcccaatctgacgacaaca


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ACAGCAACATGCCTTTCAGCGAGTG 383 107 250 Antisense
GGAGGGCAGTAGCCCAATTGCTCCC 41 517 297 Antisense
AAAGCGCGAGTTACTCTTCTCGATA 489 123 340 Antisense
GAAACTCAACAGCATGGCGAGCCGT 554 355 420 Antisense
GAAGGACAGCAGCGATAGCTCTCCG 85 335 447 Antisense
GCTCTCCGAAAAGCCAGTGCTCAGT 524 299 464 Antisense
TTCCTGAGCATCCTACTTTCGATAG 521 699 497 Antisense
GGGGACGATCATGTCACTGGTGTCA 64 499 676 Antisense
GGTGTCAATGATCTATGCCTCAGTT 662 499 694 Antisense
AGGTCTCGGAAAGTCTCTCATATAC 574 57 723 Antisense
ATATACTCCCAATCTGACGACAACA 660 19 742 Antisense
Sequence Source Affymetrix Proprietary Database