[Home] | [Total List]

[193387_at] 7 transmembrane receptor (rhodopsin family)

Description ZK1307.7 /REP_DB=WormBase Gene ID /WP=CE01696 /TR=Q09650 /GB=CAA87434.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 16      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 206.5
(1.6)
P 		108.5
(-3)
P 		182.6
(0.5)
P 		237.3
(3)
P 		129
B 270.7
(3)
P 		204.2
(0.2)
P 		130.3
(-3)
P 		191.5
(-0.4)
P 		140
C 253.8
(3)
P 		195.1
(-0.1)
P 		141.2
(-3)
P 		201
(0.2)
P 		113
avr 243.7
(3) 		169.3
(-1.8) 		151.4
(-3) 		209.9
(0.8) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 228.6
(3)
P 		131.7
(-1.1)
P 		102.8
(-2.3)
P 		85.3
(-3)
P 		120
(-1.5)
P 		97.6
(-2.5)
P 		143
B 195.8
(3)
P 		151.2
(0.4)
P 		104
(-2.4)
P 		108.4
(-2.2)
P 		98.3
(-2.8)
P 		94.6
(-3)
P 		101
C 138.2
(-2)
P 		184.1
(3)
P 		129.3
(-3)
P 		178.2
(2.4)
P 		133
(-2.6)
P 		136.9
(-2.2)
P 		55
avr 187.5
(3) 		155.7
(0.5) 		112
(-2.8) 		124
(-1.9) 		117.1
(-2.4) 		109.7
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 75.2
(3)
P 		23.5
(-3)
P 		47.7
(-0.2)
P 		34.7
(-1.7)
P 		52
B 86.3
(3)
P 		50.4
(-0.8)
P 		30.2
(-3)
P 		40.8
(-1.9)
P 		56
C 84
(3)
P 		56.1
(-0.3)
P 		49.2
(-1.2)
P 		33.9
(-3)
P 		50
avr 81.8
(3) 		43.3
(-2.1) 		42.4
(-2.2) 		36.5
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 42.1
(1.9)
P 		46.8
(3)
P 		22.4
(-2.8)
P 		21.6
(-3)
P 		36.2
(0.5)
P 		23.8
(-2.5)
P 		25
B 68.1
(3)
P 		50.3
(0.5)
P 		25.3
(-3)
P 		28.7
(-2.5)
P 		39.9
(-1)
P 		35.3
(-1.6)
P 		43
C 51.2
(1.7)
P 		56.2
(3)
P 		32.9
(-3)
P 		35.8
(-2.3)
P 		43
(-0.4)
P 		45.8
(0.3)
P 		23
avr 53.8
(3) 		51.1
(2.4) 		26.9
(-3) 		28.7
(-2.6) 		39.7
(-0.1) 		35
(-1.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3621
Sequence Type Exemplar sequence
Representative Public ID ZK1307.7 NCBI
Target Description ZK1307.7 /REP_DB=WormBase Gene ID /WP=CE01696 /TR=Q09650 /GB=CAA87434.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063673 NCBI Caenorhabditis elegans ZK1307.7 (ZK1307.7) mRNA, complete cds. 11/11 None
SNAP00000021421 ENSEMBL cdna:SNAP chromosome:CEL140:II:9637535:9639963:1 11/11 None
GENEFINDER00000021429 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9636539:9639963:1 11/11 None
ZK1307.7 ENSEMBL cdna:known chromosome:CEL140:II:9636539:9639963:1 gene:ZK1307.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9636535-9639530(+) 90.09 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl ZK1307.7
Entrez Gene 191562 Entrez gene
SwissProt Q09650 EMBL-EBI
WormBase CE37863 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87434 Hypothetical protein ZK1307.7 [Caenorhabditis elegans] ref|NP_496074.2| ZK1307.7 [Caenorhabditis elegans] 0.0
blast CAE56398 Hypothetical protein CBG24086 [Caenorhabditis briggsae] 1.0E-130
blast CAE56398 Hypothetical protein CBG24086 [Caenorhabditis briggsae] 1.0E-123
blast CAE64917 Hypothetical protein CBG09737 [Caenorhabditis briggsae] 3.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496074.2 6 44-66,78-100,120-142,163-182,217-239,269-291
ZK1307.7 6 44-66,78-100,120-142,163-182,217-239,269-291
SNAP00000021421 6 5-24,36-58,78-100,121-140,175-197,227-249
GENEFINDER00000021429 6 44-66,78-100,120-142,163-182,217-239,269-291
Sequence
Target Sequence 
>C. ELEGANS:193387_AT
aatgtgtttctacctcaactttgcaataatgcatcgtctccgaattcaacacctcggtgc
gaaactctttcgattcgccacatcagagcatcgtcagaatatccgagccgccacgctgat
gcttgttgcagttacatgttcatatctggcatcaaaccttctcaatgttgtagtatacac
ttgggaactggtagataaagagtcattactatcagaaaacattcggcctctttacacttt
atcttcggatttggtatcattgctgactgtggtcgcaagtgcttgtcgacttccgattta
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGTTTCTACCTCAACTTTGCA 673 163 702 Antisense
ATGCATCGTCTCCGAATTCAACACC 619 43 730 Antisense
GTGCGAAACTCTTTCGATTCGCCAC 1 479 758 Antisense
TCGCCACATCAGAGCATCGTCAGAA 254 599 776 Antisense
CATCGTCAGAATATCCGAGCCGCCA 1 209 790 Antisense
CGCCACGCTGATGCTTGTTGCAGTT 700 257 810 Antisense
ATATCTGGCATCAAACCTTCTCAAT 272 21 843 Antisense
TCAGAAAACATTCGGCCTCTTTACA 536 623 913 Antisense
CCTCTTTACACTTTATCTTCGGATT 365 267 928 Antisense
TGCTGACTGTGGTCGCAAGTGCTTG 429 581 962 Antisense
AGTGCTTGTCGACTTCCGATTTATT 218 61 979 Antisense
Sequence Source Affymetrix Proprietary Database