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[193386_at]

Description F40A3.3 /REP_DB=WormBase Gene ID /WP=CE10146 /TR=SW:O16264 /GB=AAB65322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=phosphatidylethanolamine binding protein
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 36      6grp_total > 72      4grp_total > 58      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4593
1 2 3 4 range
A 3055.7
(-1.2)
P 		5102.5
(2.1)
P 		5667.9
(3)
P 		1924.5
(-3)
P 		3743
B 3632.5
(-0.8)
P 		6089
(2.6)
P 		6373.7
(3)
P 		2071.6
(-3)
P 		4302
C 3297.4
(-0.6)
P 		5641.9
(3)
P 		5167.4
(2.3)
P 		1780.8
(-3)
P 		3861
avr 3328.5
(-0.8) 		5611.1
(2.8) 		5736.3
(3) 		1925.6
(-3) 		3811

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3518
1 2 3 4 5 6 range
A 3665.6
(-2.5)
P 		4304.7
(-1.3)
P 		6155.8
(2.3)
P 		6513.1
(3)
P 		4776.7
(-0.4)
P 		3417.4
(-3)
P 		3096
B 3251.2
(-2.5)
P 		3737
(-1.4)
P 		5687.7
(2.8)
P 		5776.8
(3)
P 		4720.5
(0.7)
P 		3005.6
(-3)
P 		2771
C 3529.6
(-2.3)
P 		3453.5
(-2.4)
P 		6392.1
(2.8)
P 		6523.5
(3)
P 		5294.3
(0.8)
P 		3138.8
(-3)
P 		3385
avr 3482.1
(-2.4) 		3831.7
(-1.7) 		6078.5
(2.6) 		6271.1
(3) 		4930.5
(0.4) 		3187.3
(-3) 		3084
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1519
1 2 3 4 range
A 1112.6
(1.2)
P 		1107.6
(1.1)
P 		1481.7
(3)
P 		281.7
(-3)
P 		1200
B 1158.4
(1)
P 		1503.9
(3)
P 		1476.9
(2.8)
P 		441.5
(-3)
P 		1062
C 1091.5
(0.2)
P 		1622.1
(2.3)
P 		1801
(3)
P 		300.3
(-3)
P 		1501
avr 1120.8
(0.8) 		1411.2
(2.2) 		1586.5
(3) 		341.2
(-3) 		1245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1242
1 2 3 4 5 6 range
A 675.7
(-3)
P 		1531
(2.3)
P 		1340.6
(1.1)
P 		1651.9
(3)
P 		1441.4
(1.7)
P 		832
(-2)
P 		976
B 1131.3
(-2.9)
P 		1243.9
(-2.1)
P 		1381.1
(-1)
P 		1530.1
(0.1)
P 		1917.9
(3)
P 		1120.8
(-3)
P 		797
C 1308.3
(-0.7)
P 		1053.8
(-3)
P 		1626.9
(2.2)
P 		1311.9
(-0.6)
P 		1713.2
(3)
P 		1050.7
(-3)
P 		663
avr 1038.4
(-2.7) 		1276.2
(-0.6) 		1449.5
(0.9) 		1498
(1.3) 		1690.8
(3) 		1001.2
(-3) 		690
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11863
Sequence Type Exemplar sequence
Representative Public ID F40A3.3 NCBI
Target Description F40A3.3 /REP_DB=WormBase Gene ID /WP=CE10146 /TR=SW:O16264 /GB=AAB65322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=phosphatidylethanolamine binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028732(11), NM_001028733(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028732 NCBI Caenorhabditis elegans F40A3.3a (F40A3.3) mRNA, complete cds. 11/11 None
NM_001028733 NCBI Caenorhabditis elegans F40A3.3b (F40A3.3) mRNA, complete cds. 10/11 None
SNAP00000025355 ENSEMBL cdna:SNAP chromosome:CEL140:V:7878441:7880984:1 10/11 None
GENEFINDER00000025366 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7880207:7880984:1 11/11 None
F40A3.3 ENSEMBL cdna:known chromosome:CEL140:V:7880207:7881097:1 gene:F40A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7880207-7880985(+) 100.0 100.0
Public Domain and Genome References
Ensembl F40A3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65322 Hypothetical protein F40A3.3a [Caenorhabditis elegans] ref|NP_001023903.1| F40A3.3a [Caenorhabditis elegans] sp|O16264|PEBPH_CAEEL Phosphatidylethanolamine-binding protein homolog F40A3.3 1.0E-126
blast AAB65322 Hypothetical protein F40A3.3a [Caenorhabditis elegans] ref|NP_001023903.1| F40A3.3a [Caenorhabditis elegans] sp|O16264|PEBPH_CAEEL Phosphatidylethanolamine-binding protein homolog F40A3.3 1.0E-109
blast CAE73159 Hypothetical protein CBG20552 [Caenorhabditis briggsae] 1.0E-108
blast AAX88829 Hypothetical protein F40A3.3b [Caenorhabditis elegans] ref|NP_001023904.1| F40A3.3b [Caenorhabditis elegans] 1.0E-106
blast AAB65322 Hypothetical protein F40A3.3a [Caenorhabditis elegans] ref|NP_001023903.1| F40A3.3a [Caenorhabditis elegans] sp|O16264|PEBPH_CAEEL Phosphatidylethanolamine-binding protein homolog F40A3.3 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR008914 EMBL-EBI PEBP 2.1E-77
Pfam IPR008914 EMBL-EBI PEBP 2.1E-77
Pfam IPR008914 EMBL-EBI PEBP 2.1E-77
Sequence
Target Sequence 
>C. ELEGANS:193386_AT
gccgcaactacttctgctagattccaaagaggtctcgctacaatggccgccgaagcattc
accaaacacgaggtcattccagacgttctcgcttccaacccaccatccaaggttgtgtct
gtcaagttcaactctggcgtcgaggctaatcttggaaacgttctcactccaacccaagta
aaggatactccagaagtaaaatgggatgctgagccaggagcactctacactctcatcaag
acggatccagatgctccatctcgcaaagagccaacctaccgagagtggcatcactggctc
gtcgtcaacattccaggaaacgacattgccaaaggagacactctttccgagtacatcggc
gccggaccaccaccaaaaactggactccatcgttacgtttacctgatctacaagcaatct
ggacgcatcgaagatgccgagcacggacgtctaaccaacacttccggagacaaaagagga
ggatggaaggctgccgatttcgtcgcaaagcacaagctcggtgctccagtcttcggaaat
ctgttccaggccgagtacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCAACTACTTCTGCTAGATTCC 485 285 79 Antisense
ACACGAGGTCATTCCAGACGTTCTC 401 107 144 Antisense
ACCCACCATCCAAGGTTGTGTCTGT 363 91 176 Antisense
CACTCTACACTCTCATCAAGACGGA 80 197 299 Antisense
CAAGACGGATCCAGATGCTCCATCT 507 185 315 Antisense
CTGGCTCGTCGTCAACATTCCAGGA 206 239 372 Antisense
CACTCTTTCCGAGTACATCGGCGCC 613 197 417 Antisense
GACTCCATCGTTACGTTTACCTGAT 562 373 461 Antisense
ATGCCGAGCACGGACGTCTAACCAA 491 41 512 Antisense
GATGGAAGGCTGCCGATTTCGTCGC 292 405 560 Antisense
AAATCTGTTCCAGGCCGAGTACGAC 347 117 615 Antisense
Sequence Source Affymetrix Proprietary Database