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[193385_at]

Description H12C20.4 /REP_DB=WormBase Gene ID /WP=CE18809 /TR=Q9XXM7 /GB=CAA18352.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 65      4grp_total > 01      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 6.1
(-3)
A 		4.8
(-3)
A 		10.8
(-2.8)
A 		164.6
(3)
P 		160
B 72
(0.9)
A 		7.3
(-3)
A 		69
(0.8)
A 		105.6
(3)
P 		98
C 39.3
(-2.4)
A 		45.4
(-2.2)
A 		24.9
(-3)
A 		175.8
(3)
P 		151
avr 39.1
(-2.1) 		19.2
(-3) 		34.9
(-2.3) 		148.7
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 6.2
(-3)
A 		28.8
(0.2)
A 		10
(-2.5)
A 		48.4
(3)
A 		15.6
(-1.7)
A 		35.8
(1.2)
A 		42
B 35.7
(-1.4)
A 		25.8
(-3)
A 		53.3
(1.4)
A 		40.4
(-0.7)
A 		63.6
(3)
A 		41.3
(-0.5)
A 		38
C 16.5
(-1.5)
A 		34.4
(0.6)
A 		54.4
(3)
A 		7.5
(-2.6)
A 		4
(-3)
A 		53.8
(2.9)
A 		50
avr 19.5
(-3) 		29.7
(-0.5) 		39.2
(1.9) 		32.1
(0.1) 		27.7
(-1) 		43.6
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 2.2
(-2.7)
A 		1.1
(-3)
A 		2.8
(-2.6)
A 		24.1
(3)
P 		23
B 23
(3)
A 		1.8
(-3)
A 		16
(1)
A 		22.5
(2.9)
P 		21
C 13
(-1.8)
A 		13
(-1.8)
A 		8.7
(-3)
A 		29.6
(3)
P 		21
avr 12.7
(-0.8) 		5.3
(-3) 		9.2
(-1.8) 		25.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.1
(-3)
A 		10.2
(1.9)
A 		2.2
(-2.4)
A 		12.3
(3)
A 		4.7
(-1.1)
A 		8.7
(1.1)
A 		11
B 12.4
(-1.7)
A 		8.6
(-3)
A 		12.9
(-1.5)
A 		10.7
(-2.3)
A 		25.9
(3)
A 		15.4
(-0.6)
A 		17
C 6.1
(-1.3)
A 		10.5
(0.3)
A 		13.8
(1.5)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		18
(3)
A 		17
avr 6.5
(-3) 		9.8
(-0.4) 		9.6
(-0.5) 		8.2
(-1.6) 		10.6
(0.3) 		14
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13054
Sequence Type Exemplar sequence
Representative Public ID H12C20.4 NCBI
Target Description H12C20.4 /REP_DB=WormBase Gene ID /WP=CE18809 /TR=Q9XXM7 /GB=CAA18352.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002551 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11579220:11580500:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
H12C20.4 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11579219-11580500(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23066 hypothetical protein H12C20.4 - Caenorhabditis elegans 1.0E-154
blast CAE73878 Hypothetical protein CBG21469 [Caenorhabditis briggsae] 6.0E-86
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.3E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002551 6 20-42,57-79,91-113,156-178,199-218,228-250
Sequence
Target Sequence 
>C. ELEGANS:193385_AT
tttgtgcagtattcttcccatttaaatattcccaaatattttccgtttcaaatacaacag
tagtattgttttttatttacatttatcgaattctgagaagaatatgcgaactattgccac
tttcagctgtcggttgttatgcactgtattccccaaaagatcttgcatggaatttcgatc
catcttcacattgtgaatggtttggcggagctttggaagagataacatatacgtttattg
ttacatcagtattgaacattatcactttggccaaaataatatatttttacggaagaagaa
catcaaatgcagacaaggatttaaaaaagagaatgcggaaaaatacaattaactttttgc
aaacaatttttccagattctctatatcttattgacatgtcattcacttttaaaataagtt
cctggagtactcatcgtatatggacttatatcagtggagcacttatttgggaatgcttac
acgctttcgatggatttgtgatggtaatgtttcatgatcaagtgtcaattttcaaacgag
agaagataaatgtttctggtaatgcaatattccagtcatcgcggcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGCAGTATTCTTCCCATTTAA 311 667 257 Antisense
ATGCGAACTATTGCCACTTTCAGCT 29 43 360 Antisense
CCACTTTCAGCTGTCGGTTGTTATG 666 273 373 Antisense
TCGGTTGTTATGCACTGTATTCCCC 617 605 386 Antisense
GCACTGTATTCCCCAAAAGATCTTG 253 315 397 Antisense
GGAATTTCGATCCATCTTCACATTG 624 533 425 Antisense
TTGTGAATGGTTTGGCGGAGCTTTG 394 707 447 Antisense
GAACATTATCACTTTGGCCAAAATA 9 351 510 Antisense
AAGTTCCTGGAGTACTCATCGTATA 552 155 672 Antisense
AATGCTTACACGCTTTCGATGGATT 217 165 728 Antisense
TGCAATATTCCAGTCATCGCGGCAG 238 577 819 Antisense
Sequence Source Affymetrix Proprietary Database