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[193382_at]

Description F18A1.4 /REP_DB=WormBase Gene ID /WP=CE04404 /CHR=2 /FEA=Sanger Annotation /DEF=locus:lir-2 contains C2H2-type zinc finger (ST.LOUIS) TR:Q19538 protein_id:AAB63401.1
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 81      6grp_total > 40      4grp_total > 05      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 265.7
(-1.2)
P 		255.6
(-1.7)
P 		224.6
(-3)
P 		362.5
(3)
P 		138
B 216.5
(-0.6)
P 		170.2
(-3)
P 		255.9
(1.5)
P 		284.7
(3)
P 		115
C 313.8
(0.6)
P 		181.3
(-3)
P 		224.1
(-1.8)
P 		401.9
(3)
P 		221
avr 265.3
(-0.4) 		202.4
(-3) 		234.9
(-1.7) 		349.7
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 367
(3)
P 		289.8
(-0)
P 		319.7
(1.1)
P 		267.5
(-0.9)
P 		214.5
(-3)
P 		252.1
(-1.5)
P 		153
B 238.1
(-1)
P 		244.9
(-0.5)
P 		298.9
(3)
P 		287.3
(2.2)
P 		206.6
(-3)
P 		215.6
(-2.4)
P 		92
C 233.9
(-1.4)
P 		311.1
(1)
P 		375.6
(3)
P 		313.6
(1.1)
P 		183.1
(-3)
P 		283.9
(0.1)
P 		193
avr 279.7
(0.6) 		281.9
(0.7) 		331.4
(3) 		289.5
(1.1) 		201.4
(-3) 		250.5
(-0.7) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 96.8
(3)
P 		55.5
(-2.7)
P 		58.7
(-2.2)
P 		53.1
(-3)
P 		44
B 69
(3)
P 		42
(-3)
P 		59.3
(0.8)
P 		60.7
(1.2)
P 		27
C 103.9
(3)
P 		52.1
(-3)
P 		78.1
(0)
P 		67.8
(-1.2)
P 		52
avr 89.9
(3) 		49.9
(-3) 		65.4
(-0.7) 		60.5
(-1.4) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 67.7
(-2.1)
P 		103.1
(3)
P 		69.6
(-1.8)
P 		67.9
(-2.1)
P 		64.7
(-2.5)
P 		61.4
(-3)
P 		42
B 82.8
(2.4)
P 		81.5
(1.7)
P 		72.6
(-3)
P 		76.1
(-1.2)
P 		84
(3)
P 		80.4
(1.1)
P 		11
C 86.7
(1.5)
P 		94.9
(2.9)
P 		95.6
(3)
P 		63.1
(-2.4)
P 		59.3
(-3)
P 		95
(2.9)
P 		36
avr 79.1
(-0.5) 		93.2
(3) 		79.3
(-0.4) 		69
(-3) 		69.3
(-2.9) 		78.9
(-0.5) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5083
Sequence Type Exemplar sequence
Representative Public ID F18A1.4 NCBI
Target Description F18A1.4 /REP_DB=WormBase Gene ID /WP=CE04404 /CHR=2 /FEA=Sanger Annotation /DEF=locus:lir-2 contains C2H2-type zinc finger (ST.LOUIS) TR:Q19538 protein_id:AAB63401.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026926(11), NM_001026927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026926 NCBI Caenorhabditis elegans LIn-26 Related family member (lir-2) (lir-2) mRNA, complete cds. 11/11 None
NM_001026927 NCBI Caenorhabditis elegans LIn-26 Related family member (lir-2) (lir-2) mRNA, complete cds. 11/11 None
SNAP00000013713 ENSEMBL cdna:SNAP chromosome:CEL140:II:7667924:7671712:1 11/11 None
GENEFINDER00000013725 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7667924:7671712:1 11/11 None
F18A1.4a ENSEMBL cdna:known chromosome:CEL140:II:7667911:7671823:1 gene:F18A1.4 11/11 None
F18A1.4b ENSEMBL cdna:known chromosome:CEL140:II:7668344:7671823:1 gene:F18A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7667838-7671709(+) 98.79 100.0
Public Domain and Genome References
Ensembl F18A1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67252 Lin-26 related protein 2, isoform a [Caenorhabditis elegans] ref|NP_001022097.1| LIn-26 Related family member (lir-2) [Caenorhabditis elegans] emb|CAA10263.1| LIR-2A protein [Caenorhabditis elegans] 0.0
blast T34220 hypothetical protein F18A1.4 - Caenorhabditis elegans 0.0
blast AAK67248 Lin-26 related protein 2, isoform b [Caenorhabditis elegans] ref|NP_001022098.1| LIn-26 Related family member (lir-2) [Caenorhabditis elegans] emb|CAA10264.1| LIR-2B protein [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:193382_AT
gagatttctcgagatggaacaccattttggtcaacaccaattccaccaactaacaaagaa
ttgccggtttcccctgtatcacaattggacatgacgaattcaatcaagagcagagtggaa
cgtgttgatgtagaagttaaactggaaccttgcaatgacgaagatgatgaatttagtgaa
gaagttgatgaacaaactgctgaattggaagaacaactagcaactgaagctatacggact
ggtttggcactttttggaaaagtttccccatctccaaaacgaatgaaatcatgtggaagt
tctggaagtgtttgtggagatgtagtcacagcgatttgtgagatttgtggaattggaatt
cgcctgaattctggtggttctaaatggaatttctttgaacacgtaatgatgaaacactcc
actcataaaccattcaaatgttcccaatgtccatatcaagctgtacgaaaagttcgtgta
aagcagcacggacaatcacaacacaattcggaacacgaacctgtgaatatgataacacca
gaagtacgaaaagaatggctggatacaatggcaaagtgtttcccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTCTCGAGATGGAACACCAT 172 397 1048 Antisense
GGAACACCATTTTGGTCAACACCAA 206 529 1063 Antisense
GGTTTCCCCTGTATCACAATTGGAC 474 505 1113 Antisense
TAAACTGGAACCTTGCAATGACGAA 110 639 1185 Antisense
TACGGACTGGTTTGGCACTTTTTGG 370 621 1280 Antisense
GTTTCCCCATCTCCAAAACGAATGA 128 449 1309 Antisense
AATTCGCCTGAATTCTGGTGGTTCT 527 177 1404 Antisense
GAAACACTCCACTCATAAACCATTC 397 355 1458 Antisense
ATGTTCCCAATGTCCATATCAAGCT 365 47 1485 Antisense
AGCAGCACGGACAATCACAACACAA 561 77 1529 Antisense
GATACAATGGCAAAGTGTTTCCCGA 437 423 1609 Antisense
Sequence Source Affymetrix Proprietary Database