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[193377_at] 7 transmembrane receptor (rhodopsin family)

Description F57A8.4 /REP_DB=WormBase Gene ID /WP=CE05985 /TR=Q20915 /GB=CAA94832.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 287.7
(3)
P 		176
(-1)
P 		122.1
(-3)
P 		199.9
(-0.2)
P 		166
B 323.7
(3)
P 		172.1
(-1.2)
P 		108.2
(-3)
P 		217.3
(0)
P 		216
C 341.5
(3)
P 		268
(0.3)
P 		198.4
(-2.2)
P 		175.6
(-3)
P 		166
avr 317.6
(3) 		205.4
(-0.9) 		142.9
(-3) 		197.6
(-1.1) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 221.6
(3)
P 		203.3
(2)
P 		151.4
(-0.7)
P 		127.4
(-2)
P 		211.4
(2.5)
P 		108.4
(-3)
P 		113
B 168.9
(1.3)
P 		208.1
(3)
P 		72.6
(-3)
P 		177.2
(1.6)
P 		118.7
(-1)
P 		109.7
(-1.4)
P 		136
C 200.2
(3)
P 		183.1
(2)
P 		99.5
(-3)
P 		179
(1.7)
P 		141.3
(-0.5)
P 		152.6
(0.2)
P 		101
avr 196.9
(2.9) 		198.2
(3) 		107.8
(-3) 		161.2
(0.5) 		157.1
(0.3) 		123.6
(-2) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 104.7
(3)
P 		38.2
(-2.3)
P 		31.9
(-2.8)
P 		29.3
(-3)
P 		75
B 103.2
(3)
P 		42.5
(-1.7)
P 		25.1
(-3)
P 		46.3
(-1.4)
P 		78
C 113.1
(3)
P 		77
(0.4)
P 		69.1
(-0.2)
P 		29.6
(-3)
P 		84
avr 107
(3) 		52.6
(-1.5) 		42
(-2.4) 		35.1
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 40.8
(-1.1)
P 		72.3
(3)
P 		33
(-2.1)
P 		32.3
(-2.2)
P 		63.8
(1.9)
P 		26.4
(-3)
P 		46
B 58.8
(1.8)
P 		69.3
(3)
P 		17.6
(-3)
P 		46.9
(0.4)
P 		48.2
(0.6)
P 		40.9
(-0.3)
P 		52
C 74.2
(3)
P 		55.9
(0.8)
P 		25.3
(-3)
P 		36
(-1.7)
P 		45.7
(-0.5)
P 		51.1
(0.2)
P 		49
avr 57.9
(1.8) 		65.8
(3) 		25.3
(-3) 		38.4
(-1.1) 		52.6
(1) 		39.5
(-0.9) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11453
Sequence Type Exemplar sequence
Representative Public ID F57A8.4 NCBI
Target Description F57A8.4 /REP_DB=WormBase Gene ID /WP=CE05985 /TR=Q20915 /GB=CAA94832.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073182 NCBI Caenorhabditis elegans F57A8.4 (F57A8.4) mRNA, complete cds. 11/11 None
SNAP00000034037 ENSEMBL cdna:SNAP chromosome:CEL140:V:10069669:10071352:1 11/11 None
GENEFINDER00000034043 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10069669:10071409:1 11/11 None
F57A8.4 ENSEMBL cdna:known chromosome:CEL140:V:10069669:10071399:1 gene:F57A8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10069668-10071352(+) 99.92 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl F57A8.4
Entrez Gene 186430 Entrez gene
SwissProt Q20915 EMBL-EBI
WormBase CE05985 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94832 Hypothetical protein F57A8.4 [Caenorhabditis elegans] ref|NP_505583.1| F57A8.4 [Caenorhabditis elegans] 0.0
blast CAE61040 Hypothetical protein CBG04784 [Caenorhabditis briggsae] 0.0
blast CAE61040 Hypothetical protein CBG04784 [Caenorhabditis briggsae] 1.0E-168
blast CAA91282 Hypothetical protein E04D5.2 [Caenorhabditis elegans] ref|NP_496241.1| E04D5.2 [Caenorhabditis elegans] 3.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505583.1 7 30-52,65-87,107-129,149-171,208-230,275-297,317-339
F57A8.4 7 30-52,65-87,107-129,149-171,208-230,275-297,317-339
SNAP00000034037 6 30-52,72-94,115-137,169-191,236-258,278-300
GENEFINDER00000034043 7 30-52,65-87,107-129,149-171,208-230,275-297,317-339
Sequence
Target Sequence 
>C. ELEGANS:193377_AT
atacacccattcttgccagttgggaacattatcaaatgttcaatttttatgtgatgacgg
ttcttcacattttcgtaccatttgctcttctactgatgctcaatatttccattgtcgttg
ttacgaaaaggaaattgactggaattggatgggcggtcacaacatttattgatatgccaa
aagttagtgagatgattcgaaaagagtctatcaattcaaacaagaggcgaagagatgagc
tacggtatgctacatggacaatggtttcaattgcaacaacttacctttgttgttcgtctc
tttccttgtttataggaatattggaaaatgtttggccggaaaacacacttcttttccagg
aagatggatcgagtacgaaattttacactttcgcatcagacgctgtcagtattttggttg
cagtcaactcacttcttcgaattgttgtgtactcactttgcagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACACCCATTCTTGCCAGTTGGGA 17 25 581 Antisense
GATGACGGTTCTTCACATTTTCGTA 88 413 633 Antisense
TCACATTTTCGTACCATTTGCTCTT 520 627 645 Antisense
ATTTGCTCTTCTACTGATGCTCAAT 40 19 660 Antisense
AATATTTCCATTGTCGTTGTTACGA 360 173 682 Antisense
GGATGGGCGGTCACAACATTTATTG 409 513 727 Antisense
CAACTTACCTTTGTTGTTCGTCTCT 42 137 857 Antisense
GTTCGTCTCTTTCCTTGTTTATAGG 628 441 872 Antisense
CACTTTCGCATCAGACGCTGTCAGT 595 195 966 Antisense
TTGCAGTCAACTCACTTCTTCGAAT 710 697 998 Antisense
TTGTTGTGTACTCACTTTGCAGCCC 279 707 1022 Antisense
Sequence Source Affymetrix Proprietary Database