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[193373_at] 7 transmembrane receptor (rhodopsin family)

Description ZK863.1 /REP_DB=WormBase Gene ID /WP=CE15435 /TR=Q23650 /GB=CAB01453.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 12      4grp_total > 13      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 103.2
(0.6)
P 		47
(-3)
A 		59.3
(-2.2)
A 		141.4
(3)
M 		94
B 91
(0.8)
P 		80.4
(0.3)
A 		12.6
(-3)
A 		135.5
(3)
P 		123
C 85.1
(-1)
A 		65.5
(-2.1)
A 		50
(-3)
A 		155.6
(3)
P 		106
avr 93.1
(0) 		64.3
(-1.6) 		40.6
(-3) 		144.2
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 98.4
(2.2)
P 		110.8
(3)
P 		85.2
(1.3)
A 		61.5
(-0.3)
A 		92.7
(1.8)
A 		20.2
(-3)
A 		91
B 98.1
(1.6)
P 		114.8
(2.8)
M 		96.5
(1.5)
P 		117.1
(3)
P 		73.4
(-0.2)
A 		35
(-3)
A 		82
C 103.3
(2.1)
A 		112.5
(3)
A 		70.7
(-1)
A 		59.6
(-2)
A 		49.2
(-3)
P 		59.1
(-2.1)
M 		63
avr 99.9
(2) 		112.7
(3) 		84.1
(0.7) 		79.4
(0.3) 		71.8
(-0.3) 		38.1
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 37.6
(3)
P 		10.2
(-3)
A 		15.5
(-1.8)
A 		20.7
(-0.7)
M 		27
B 29
(3)
P 		19.8
(0.9)
A 		2.9
(-3)
A 		28.9
(3)
P 		26
C 28.2
(3)
A 		18.8
(-2.2)
A 		17.4
(-3)
A 		26.2
(1.9)
P 		11
avr 31.6
(3) 		16.3
(-1.7) 		11.9
(-3) 		25.3
(1.1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 18.1
(-0.7)
P 		39.4
(3)
P 		18.5
(-0.6)
A 		15.6
(-1.1)
A 		28
(1)
A 		4.9
(-3)
A 		35
B 34.1
(2)
P 		38.2
(3)
M 		23.4
(-0.5)
P 		31
(1.3)
P 		29.8
(1)
A 		13
(-3)
A 		25
C 38.3
(3)
A 		34.3
(2.1)
A 		18
(-1.6)
A 		12
(-3)
A 		15.9
(-2.1)
P 		19.8
(-1.2)
M 		26
avr 30.2
(1.3) 		37.3
(3) 		20
(-1.2) 		19.5
(-1.3) 		24.6
(-0.1) 		12.6
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13354
Sequence Type Exemplar sequence
Representative Public ID ZK863.1 NCBI
Target Description ZK863.1 /REP_DB=WormBase Gene ID /WP=CE15435 /TR=Q23650 /GB=CAB01453.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073653 NCBI Caenorhabditis elegans ZK863.1 (ZK863.1) mRNA, complete cds. 11/11 None
GENEFINDER00000039752 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12170810:12182013:-1 11/11 None
ZK863.1 ENSEMBL cdna:known chromosome:CEL140:V:12170970:12171998:-1 gene:ZK863.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039738 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12170969-12171998(-) 96.99 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl ZK863.1
Entrez Gene 191444 Entrez gene
SwissProt Q23650 EMBL-EBI
WormBase CE15435 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01453 Hypothetical protein ZK863.1 [Caenorhabditis elegans] ref|NP_506054.1| ZK863.1 [Caenorhabditis elegans] 1.0E-136
blast CAE75408 Hypothetical protein CBG23398 [Caenorhabditis briggsae] 1.0E-125
blast CAB01453 Hypothetical protein ZK863.1 [Caenorhabditis elegans] ref|NP_506054.1| ZK863.1 [Caenorhabditis elegans] 1.0E-118
blast CAE75408 Hypothetical protein CBG23398 [Caenorhabditis briggsae] 1.0E-102
blast NP_503838 C50H11.13 [Caenorhabditis elegans] gb|AAG24000.2| Hypothetical protein C50H11.13 [Caenorhabditis elegans] 8.0E-57
blast NP_503838 C50H11.13 [Caenorhabditis elegans] gb|AAG24000.2| Hypothetical protein C50H11.13 [Caenorhabditis elegans] 7.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506054.1 4 47-69,96-118,190-209,233-252
ZK863.1 4 47-69,96-118,190-209,233-252
GENEFINDER00000039752 5 256-275,296-318,345-367,420-439,463-482
Sequence
Target Sequence 
>C. ELEGANS:193373_AT
gtacgtgccaaatctgggctccaattacaataaccgagcttagcttctctccgggaaaca
atagccaaggcacgtattgtgcagaggatccgtacttcagcagctcatcaaagatcattg
ttctcgttgaaagcacaattacattcttcattccattcatgttaactgttctagcggata
tctcagttttggtgtcaaaagttccatggcaaacacctttcaaattaatttctgctgatg
atttaagaaacaataatagaagtgataacatgaaaattgtttcaaaattaaatttagagg
taaatgggtaccaaattttaaaaattttaaaattttggtcgcaatttcgattaaaaagcg
ctgaaaaacgaagaataaatgcaatcaaaagatgtctcatttctgcaacgctcactttag
tactaaatttgccaaattatgtccttcaggtcgttgatgagttctactcattgcgagagc
atggaaatatctccattcgacgagtttttcttcaggcggacgcagctgtttatattttgt
atcttctgcagttcccattggttccagtgaacatgtatttccttcggcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGTGCCAAATCTGGGCTCCAAT 203 459 185 Antisense
GCTTAGCTTCTCTCCGGGAAACAAT 486 303 222 Antisense
ATCCGTACTTCAGCAGCTCATCAAA 398 37 272 Antisense
AATTACATTCTTCATTCCATTCATG 48 177 321 Antisense
GCGGATATCTCAGTTTTGGTGTCAA 271 293 358 Antisense
AAGTTCCATGGCAAACACCTTTCAA 148 157 383 Antisense
TTTCTGCAACGCTCACTTTAGTACT 587 669 584 Antisense
TTGCCAAATTATGTCCTTCAGGTCG 259 693 613 Antisense
TTTTCTTCAGGCGGACGCAGCTGTT 365 677 690 Antisense
TGCAGTTCCCATTGGTTCCAGTGAA 596 577 731 Antisense
GTGAACATGTATTTCCTTCGGCAGA 349 481 751 Antisense
Sequence Source Affymetrix Proprietary Database