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[193372_at] S.pombe hypothetical protein C27F7.07C like

Description C44B9.4 /REP_DB=WormBase Gene ID /WP=CE05406 /TR=Q18605 /GB=CAA97781.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C27F7.07C like
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 91      6grp_total > 48      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 221.9
(3)
P 		135.4
(-2.9)
P 		133.2
(-3)
P 		183.5
(0.4)
P 		89
B 207.1
(3)
P 		155.3
(-1.1)
P 		143.8
(-2.1)
P 		132.1
(-3)
P 		75
C 200.4
(2.9)
P 		113.8
(-2.8)
P 		111
(-3)
P 		201.5
(3)
P 		91
avr 209.8
(3) 		134.8
(-2.6) 		129.3
(-3) 		172.4
(0.2) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 192.5
(0.5)
P 		157.8
(-1)
P 		111.9
(-3)
P 		118.8
(-2.7)
P 		161.4
(-0.8)
P 		248.2
(3)
P 		136
B 228
(2)
P 		176.8
(-1)
P 		142.4
(-3)
P 		157
(-2.1)
P 		173.9
(-1.2)
P 		245.3
(3)
P 		103
C 240
(3)
P 		171.1
(-1.8)
P 		153.5
(-3)
P 		166.9
(-2.1)
P 		164.5
(-2.2)
P 		218.6
(1.5)
P 		87
avr 220.2
(2) 		168.6
(-1.1) 		135.9
(-3) 		147.6
(-2.3) 		166.6
(-1.2) 		237.4
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 80.8
(3)
P 		29.4
(-2.7)
P 		34.8
(-2.1)
P 		26.9
(-3)
P 		54
B 66
(3)
P 		38.4
(-1.4)
P 		33.3
(-2.2)
P 		28.2
(-3)
P 		38
C 66.3
(3)
P 		32.7
(-3)
P 		38.7
(-1.9)
P 		34
(-2.8)
P 		34
avr 71
(3) 		33.5
(-2.4) 		35.6
(-2.1) 		29.7
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 35.5
(-1.2)
P 		56.1
(2.3)
P 		24.4
(-3)
P 		30.1
(-2.1)
P 		48.7
(1.1)
P 		60.4
(3)
P 		36
B 79.3
(1.7)
P 		58.9
(-0.4)
P 		34.6
(-3)
P 		41.6
(-2.3)
P 		70.7
(0.8)
P 		91.5
(3)
P 		57
C 89
(3)
P 		52.2
(-1)
P 		39.1
(-2.4)
P 		33.6
(-3)
P 		53.2
(-0.9)
P 		73.2
(1.3)
P 		55
avr 67.9
(2) 		55.7
(0.3) 		32.7
(-3) 		35.1
(-2.7) 		57.5
(0.5) 		75
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6609
Sequence Type Exemplar sequence
Representative Public ID C44B9.4 NCBI
Target Description C44B9.4 /REP_DB=WormBase Gene ID /WP=CE05406 /TR=Q18605 /GB=CAA97781.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C27F7.07C like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066996 NCBI Caenorhabditis elegans C44B9.4 (C44B9.4) mRNA, complete cds. 11/11 None
SNAP00000022575 ENSEMBL cdna:SNAP chromosome:CEL140:III:10878375:10893390:1 9/11 None
GENEFINDER00000022580 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10881808:10895609:1 9/11 None
C44B9.4 ENSEMBL cdna:known chromosome:CEL140:III:10882247:10893541:1 gene:C44B9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10882242-10893448(+) 100.0 100.0
Public Domain and Genome References
Gene Title S.pombe hypothetical protein C27F7.07C like
Gene Symbol athp-1
Ensembl C44B9.4
Entrez Gene 176517 Entrez gene
SwissProt Q18605 EMBL-EBI
WormBase CE30897 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97781 Hypothetical protein C44B9.4 [Caenorhabditis elegans] ref|NP_499397.2| C44B9.4 [Caenorhabditis elegans] 0.0
blast CAE71386 Hypothetical protein CBG18293 [Caenorhabditis briggsae] 0.0
blast CAE71386 Hypothetical protein CBG18293 [Caenorhabditis briggsae] 1.0E-167
blast CAE71386 Hypothetical protein CBG18293 [Caenorhabditis briggsae] 1.0E-161
blast CAI06058 Hypothetical protein C44B9.6 [Caenorhabditis elegans] ref|NP_001021216.1| C44B9.6 [Caenorhabditis elegans] 9.0E-44
blast AAF46150 CG3815-PA [Drosophila melanogaster] gb|AAL39199.1| GH06635p [Drosophila melanogaster] ref|NP_572311.1| CG3815-PA [Drosophila melanogaster] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.7E-20
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.7E-20
Sequence
Target Sequence 
>C. ELEGANS:193372_AT
gacgcagcactcagcaaatggacgcctgaacaatggaaagagcacaatgagcaatgtgtg
gcagcccgtctctcgtctctaatcccatacgatcaacgatatttcctaccgactcaacgg
gtcctggcacgattggatctcgaggatggcgatctacgactgccggcggtgcatcttcca
attgccattcaaagatgtgtcacaaaactcggcaccgcccatgattgccacgtacgatgt
gataaattgacgggcgatgcgtggtgctcggtgcttgcagattatcattgtgatattgtt
cgcgattattattcggataatttttatatttcgacactcggcactgaagcggtttttgtg
gatggacgggcggtacgaagaccgcggctgacaccgtttgaggcagctgagaaattgaga
actcgaggttcctcaacaatcatccctccacatatcaaatgtcgatgccaaaaacattct
gatctacaaatttcgcgccaagagagcaccggtgaactcgttcgctgtggaatcctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCAGCACTCAGCAAATGGACGC 153 381 3028 Antisense
GATCAACGATATTTCCTACCGACTC 642 419 3118 Antisense
CTCAACGGGTCCTGGCACGATTGGA 553 225 3140 Antisense
CGAGGATGGCGATCTACGACTGCCG 46 249 3168 Antisense
GTGCATCTTCCAATTGCCATTCAAA 276 481 3196 Antisense
GATGTGTCACAAAACTCGGCACCGC 294 409 3221 Antisense
GGTGCTCGGTGCTTGCAGATTATCA 95 501 3290 Antisense
GACACTCGGCACTGAAGCGGTTTTT 668 365 3360 Antisense
CAATCATCCCTCCACATATCAAATG 476 181 3464 Antisense
AAGAGAGCACCGGTGAACTCGTTCG 223 155 3527 Antisense
ACTCGTTCGCTGTGGAATCCTGAAA 127 79 3543 Antisense
Sequence Source Affymetrix Proprietary Database