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[193367_at] 7 transmembrane receptor (rhodopsin family)

Description T10H4.9 /REP_DB=WormBase Gene ID /WP=CE16394 /TR=O45779 /GB=CAB03338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 29      4grp_total > 33      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 35.8
(-3)
P 		53
(-1.2)
A 		92.5
(3)
P 		45.2
(-2)
A 		57
B 32.1
(-3)
A 		70.9
(3)
A 		57.3
(0.9)
A 		65.1
(2.1)
P 		39
C 17.2
(-3)
A 		66.8
(1)
A 		28.4
(-2.1)
A 		92
(3)
A 		75
avr 28.4
(-3) 		63.6
(2.4) 		59.4
(1.8) 		67.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 73.2
(3)
A 		26.7
(-2.4)
A 		23.1
(-2.8)
A 		33.2
(-1.7)
A 		72.4
(2.9)
A 		21.6
(-3)
A 		52
B 40.7
(0.9)
A 		52.5
(2.1)
A 		61
(3)
P 		2.8
(-3)
A 		39
(0.7)
A 		29.9
(-0.2)
A 		58
C 33.9
(0.1)
A 		56.9
(3)
A 		8.9
(-3)
A 		47.9
(1.9)
A 		26.3
(-0.8)
A 		44.7
(1.5)
A 		48
avr 49.3
(3) 		45.4
(1.9) 		31
(-2.2) 		28
(-3) 		45.9
(2) 		32.1
(-1.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13
(-0.8)
P 		11.5
(-1.3)
A 		24.2
(3)
P 		6.6
(-3)
A 		18
B 10.2
(-3)
A 		17.5
(3)
A 		13.3
(-0.5)
A 		13.9
(0)
P 		7
C 5.7
(-3)
A 		19.2
(3)
A 		9.9
(-1.1)
A 		15.5
(1.4)
A 		14
avr 9.6
(-3) 		16.1
(3) 		15.8
(2.7) 		12
(-0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.5
(0)
A 		9.5
(-1.4)
A 		5
(-3)
A 		8.4
(-1.8)
A 		21.9
(3)
A 		5.2
(-2.9)
A 		17
B 14.2
(1.8)
A 		17.5
(3)
A 		14.8
(2)
P 		0.8
(-3)
A 		15.8
(2.4)
A 		11.1
(0.7)
A 		17
C 12.6
(1.1)
A 		17.4
(3)
A 		2.3
(-3)
A 		9.6
(-0.1)
A 		8.5
(-0.5)
A 		15
(2)
A 		15
avr 13.4
(1.7) 		14.8
(2.6) 		7.4
(-2.3) 		6.3
(-3) 		15.4
(3) 		10.4
(-0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13877
Sequence Type Exemplar sequence
Representative Public ID T10H4.9 NCBI
Target Description T10H4.9 /REP_DB=WormBase Gene ID /WP=CE16394 /TR=O45779 /GB=CAB03338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074385 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-51) (srx-51) mRNA, complete cds. 11/11 None
SNAP00000030480 ENSEMBL cdna:SNAP chromosome:CEL140:V:15284525:15286148:1 10/11 None
GENEFINDER00000030490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15284525:15287342:1 11/11 None
T10H4.9 ENSEMBL cdna:known chromosome:CEL140:V:15284485:15286148:1 gene:T10H4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15284459-15286148(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol srx-51
Ensembl T10H4.9
Entrez Gene 188398 Entrez gene
SwissProt O45779 EMBL-EBI
WormBase CE34596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03338 Hypothetical protein T10H4.9 [Caenorhabditis elegans] ref|NP_506786.2| Serpentine Receptor, class X family member (srx-51) [Caenorhabditis elegans] 1.0E-159
blast CAB03338 Hypothetical protein T10H4.9 [Caenorhabditis elegans] ref|NP_506786.2| Serpentine Receptor, class X family member (srx-51) [Caenorhabditis elegans] 1.0E-142
blast CAB03338 Hypothetical protein T10H4.9 [Caenorhabditis elegans] ref|NP_506786.2| Serpentine Receptor, class X family member (srx-51) [Caenorhabditis elegans] 1.0E-123
blast AAP86615 Serpentine receptor, class x protein 50, isoform b [Caenorhabditis elegans] ref|NP_001023464.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-107
blast AAK68485 Serpentine receptor, class x protein 50, isoform a [Caenorhabditis elegans] ref|NP_001023463.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-105
blast AAP86615 Serpentine receptor, class x protein 50, isoform b [Caenorhabditis elegans] ref|NP_001023464.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 7.0E-97
blast AAK68485 Serpentine receptor, class x protein 50, isoform a [Caenorhabditis elegans] ref|NP_001023463.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 5.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506786.2 6 7-29,49-71,124-141,167-189,222-239,249-271
T10H4.9 6 7-29,49-71,124-141,167-189,222-239,249-271
SNAP00000030480 6 7-29,49-71,76-93,118-140,173-190,200-222
GENEFINDER00000030490 6 7-29,49-71,124-142,152-174,203-220,230-252
Sequence
Target Sequence 
>C. ELEGANS:193367_AT
gattctgtgcaatagtggctccgatcaaatatgaaaacattttcagcattcccaacacca
ataagttgatagctttcttctgggctagcgccactcttccttcattttatctctatgttt
acaacgactgcaaattctactttgctgacatattctgggtattcactttctccgacaatc
ccgtgtgcaacactattgcctggtatgcaggatttttgaagtataactcgattgttatca
gcattgtgataattgatgtgataacggtgtcgaaagttagaagctacaaagcaaaggtat
tcggaatatcaactcactccgcttccaagagcagttatgaaatgaacttcctgaaacagg
cctgccttcaggcttttgtgtttgtttgcgaactagtcacctattttttaattacaccga
aaatggatccaagtgagagatgggcttgctttgtattgtctactgttgcttggatatccg
tacatacgttggatggaattatcactttgagtttcaacaaggagttcaccaataccattt
ttggaaatgcaaaaccgactgacctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTGTGCAATAGTGGCTCCGAT 7 433 311 Antisense
TGATAGCTTTCTTCTGGGCTAGCGC 242 565 377 Antisense
CTCTTCCTTCATTTTATCTCTATGT 64 231 404 Antisense
TATTCTGGGTATTCACTTTCTCCGA 465 663 461 Antisense
ATCCCGTGTGCAACACTATTGCCTG 198 39 488 Antisense
TCACTCCGCTTCCAAGAGCAGTTAT 256 627 624 Antisense
AACTTCCTGAAACAGGCCTGCCTTC 302 117 655 Antisense
TGCCTTCAGGCTTTTGTGTTTGTTT 250 585 673 Antisense
ATGGGCTTGCTTTGTATTGTCTACT 181 51 750 Antisense
TTGTCTACTGTTGCTTGGATATCCG 656 705 766 Antisense
GAAATGCAAAACCGACTGACCTCTC 54 361 854 Antisense
Sequence Source Affymetrix Proprietary Database