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[193366_at] 7 transmembrane receptor (rhodopsin family)

Description F31B9.1 /REP_DB=WormBase Gene ID /WP=CE17727 /TR=O62189 /GB=CAB04223.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_high1_10_10 > 49      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_total > 39      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 107.3
(-1.3)
P 		74.1
(-2.5)
P 		59.6
(-3)
P 		224.5
(3)
P 		165
B 118.9
(-0.7)
P 		94.2
(-1.8)
P 		68
(-3)
P 		199.3
(3)
P 		131
C 140.5
(-0.1)
P 		105
(-1.2)
P 		51.7
(-3)
P 		233.9
(3)
P 		182
avr 122.2
(-0.7) 		91.1
(-1.8) 		59.8
(-3) 		219.2
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 94.2
(3)
P 		49.2
(-2.1)
P 		41.3
(-3)
P 		61.3
(-0.7)
P 		69.5
(0.2)
P 		65.8
(-0.2)
P 		53
B 73.5
(-0.1)
P 		50.4
(-3)
P 		74.5
(0)
P 		66
(-1)
P 		98
(3)
P 		86
(1.5)
P 		48
C 66.1
(-1.5)
P 		100.9
(3)
P 		54.2
(-3)
A 		65.8
(-1.5)
P 		83.8
(0.8)
P 		84.7
(0.9)
P 		47
avr 77.9
(1.7) 		66.8
(-0.8) 		56.7
(-3) 		64.4
(-1.3) 		83.8
(3) 		78.8
(1.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 39.1
(3)
P 		16.1
(-2.9)
P 		15.6
(-3)
P 		32.9
(1.4)
P 		24
B 37.9
(2)
P 		23.3
(-1.3)
P 		15.8
(-3)
P 		42.5
(3)
P 		27
C 46.5
(3)
P 		30.2
(-0.4)
P 		18
(-3)
P 		39.4
(1.5)
P 		29
avr 41.2
(3) 		23.2
(-1.4) 		16.5
(-3) 		38.3
(2.3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.4
(1.2)
P 		17.5
(1.3)
P 		9
(-3)
P 		15.5
(0.3)
P 		21
(3)
P 		16
(0.5)
P 		12
B 25.6
(-0.7)
P 		16.8
(-3)
P 		18.1
(-2.7)
P 		17.5
(-2.8)
P 		39.8
(3)
P 		32.1
(1)
P 		23
C 24.5
(0.9)
P 		30.8
(3)
P 		13.8
(-2.8)
A 		13.2
(-3)
P 		27.1
(1.7)
P 		28.3
(2.1)
P 		18
avr 22.5
(0.4) 		21.7
(0.1) 		13.6
(-3) 		15.4
(-2.3) 		29.3
(3) 		25.5
(1.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17800
Sequence Type Exemplar sequence
Representative Public ID F31B9.1 NCBI
Target Description F31B9.1 /REP_DB=WormBase Gene ID /WP=CE17727 /TR=O62189 /GB=CAB04223.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078211 NCBI Caenorhabditis elegans F31B9.1 (F31B9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004212 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15912017:15914075:1 11/11 None
F31B9.1 ENSEMBL cdna:known chromosome:CEL140:X:15910554:15914075:1 gene:F31B9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004205 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15910553-15914075(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl F31B9.1
Entrez Gene 185141 Entrez gene
SwissProt O62189 EMBL-EBI
WormBase CE17727 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04223 Hypothetical protein F31B9.1 [Caenorhabditis elegans] ref|NP_510612.1| F31B9.1 [Caenorhabditis elegans] 0.0
blast CAE69725 Hypothetical protein CBG15996 [Caenorhabditis briggsae] 0.0
blast CAB04223 Hypothetical protein F31B9.1 [Caenorhabditis elegans] ref|NP_510612.1| F31B9.1 [Caenorhabditis elegans] 1.0E-134
blast CAE69725 Hypothetical protein CBG15996 [Caenorhabditis briggsae] 1.0E-124
blast CAE64925 Hypothetical protein CBG09746 [Caenorhabditis briggsae] 1.0E-34
blast CAA88290 Hypothetical protein T27D1.3 [Caenorhabditis elegans] ref|NP_497744.1| T27D1.3 [Caenorhabditis elegans] sp|Q09638|YR13_CAEEL Probable G-protein coupled receptor T27D1.3 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.5E-45
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.1E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510612.1 7 63-85,98-120,140-162,175-197,227-249,273-295,310-332
F31B9.1 7 63-85,98-120,140-162,175-197,227-249,273-295,310-332
GENEFINDER00000004212 4 24-46,76-98,122-144,159-181
Sequence
Target Sequence 
>C. ELEGANS:193366_AT
ggaatctcccataaaacgcgaacctacttcaagtactgtgagctgattgttctttatgcg
attccgttggttttcctcaccacactctattccatcatgtgtcgtgttctctggggaaac
gaggataatcacaacattgcaaatcatagtcaacaagaggccattctcaaattgcgacgt
tctgtggtcaaaatgctcattatctcaatgctcctatattttttgtgctacacaccaatt
caggtactatttatgctcgagaaaatactggatcacagcgttcaacttcctcaatggctg
cgtctgctgctcaatgtgctttcagtaatgagttcctccacaaatcccatcgtctacatc
atttgttgccgtcacttccgcctacgcctccgcgacgtggccgccggaatttcatcgttc
tgttgctggctgctcccttcgttctcgaaatcggaatatgagtgtgtggatgagtcaatg
acggcaaagttatcacgttctccgtatgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCTCCCATAAAACGCGAACCT 488 533 646 Antisense
TTATGCGATTCCGTTGGTTTTCCTC 78 679 699 Antisense
TATTCCATCATGTGTCGTGTTCTCT 537 663 733 Antisense
GAGGCCATTCTCAAATTGCGACGTT 640 405 802 Antisense
AATGCTCATTATCTCAATGCTCCTA 146 167 837 Antisense
TGCTCCTATATTTTTTGTGCTACAC 16 583 854 Antisense
ACTGGATCACAGCGTTCAACTTCCT 497 97 912 Antisense
TAATGAGTTCCTCCACAAATCCCAT 261 637 971 Antisense
CGTCTACATCATTTGTTGCCGTCAC 253 247 996 Antisense
GAATTTCATCGTTCTGTTGCTGGCT 633 325 1052 Antisense
AGTTATCACGTTCTCCGTATGTCTC 527 63 1133 Antisense
Sequence Source Affymetrix Proprietary Database