[Home] | [Total List]

[193364_at] 7 transmembrane receptor (rhodopsin family)

Description F54E4.2 /REP_DB=WormBase Gene ID /WP=CE11076 /TR=Q93784 /GB=CAB01915.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 12      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 41.2
(-3)
A 		42.7
(-2.9)
A 		61.8
(-1.3)
A 		113.2
(3)
A 		72
B 56.6
(3)
M 		52.1
(2.1)
A 		48.9
(1.5)
A 		25.1
(-3)
A 		32
C 40.3
(-1.9)
A 		85.8
(3)
A 		30.3
(-3)
A 		68.6
(1.1)
A 		56
avr 46
(-3) 		60.2
(0.7) 		47
(-2.7) 		69
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 67.1
(3)
A 		56.9
(1.6)
A 		53.6
(1.2)
A 		63.9
(2.6)
A 		42.9
(-0.2)
A 		22.2
(-3)
A 		45
B 54
(2.2)
A 		51.2
(1.8)
A 		60.7
(3)
A 		13.2
(-3)
A 		46.9
(1.3)
A 		44.6
(1)
A 		48
C 25.5
(-2)
A 		90.8
(3)
P 		29.8
(-1.7)
A 		58.3
(0.5)
A 		33.4
(-1.4)
A 		13
(-3)
A 		78
avr 48.9
(0.4) 		66.3
(3) 		48
(0.2) 		45.1
(-0.2) 		41.1
(-0.8) 		26.6
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15
(1.7)
A 		9.3
(-3)
A 		16.2
(2.7)
A 		16.6
(3)
A 		7
B 18.1
(3)
M 		12.9
(0.5)
A 		11.3
(-0.2)
A 		5.4
(-3)
A 		13
C 13.3
(-1.9)
A 		24.7
(3)
A 		10.6
(-3)
A 		11.6
(-2.6)
A 		14
avr 15.5
(2.9) 		15.6
(3) 		12.7
(-1) 		11.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12.4
(-0.2)
A 		20.2
(3)
A 		11.7
(-0.4)
A 		16.2
(1.4)
A 		13
(0.1)
A 		5.4
(-3)
A 		15
B 18.8
(2.9)
A 		17
(2.2)
A 		14.7
(1.3)
A 		3.5
(-3)
A 		19.1
(3)
A 		16.6
(2)
A 		16
C 9.5
(-1.7)
A 		27.7
(3)
P 		7.6
(-2.2)
A 		11.7
(-1.1)
A 		10.8
(-1.4)
A 		4.4
(-3)
A 		23
avr 13.6
(-0.8) 		21.6
(3) 		11.3
(-1.8) 		10.5
(-2.2) 		14.3
(-0.4) 		8.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17372
Sequence Type Exemplar sequence
Representative Public ID F54E4.2 NCBI
Target Description F54E4.2 /REP_DB=WormBase Gene ID /WP=CE11076 /TR=Q93784 /GB=CAB01915.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078031 NCBI Caenorhabditis elegans F54E4.2 (F54E4.2) mRNA, complete cds. 11/11 None
SNAP00000032268 ENSEMBL cdna:SNAP chromosome:CEL140:X:14625505:14627092:-1 11/11 None
GENEFINDER00000032275 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14625505:14628836:-1 11/11 None
F54E4.2 ENSEMBL cdna:known chromosome:CEL140:X:14625505:14628836:-1 gene:F54E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14625504-14628836(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl F54E4.2
Entrez Gene 186246 Entrez gene
SwissProt Q93784 EMBL-EBI
WormBase CE11076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01915 Hypothetical protein F54E4.2 [Caenorhabditis elegans] ref|NP_510432.1| F54E4.2 [Caenorhabditis elegans] 0.0
blast CAE63208 Hypothetical protein CBG07563 [Caenorhabditis briggsae] 1.0E-149
blast CAE63208 Hypothetical protein CBG07563 [Caenorhabditis briggsae] 1.0E-147
blast CAB01915 Hypothetical protein F54E4.2 [Caenorhabditis elegans] ref|NP_510432.1| F54E4.2 [Caenorhabditis elegans] 1.0E-130
blast CAE63208 Hypothetical protein CBG07563 [Caenorhabditis briggsae] 1.0E-106
blast AAA82442 Hypothetical protein AH9.4 [Caenorhabditis elegans] ref|NP_508417.2| AH9.4 [Caenorhabditis elegans] sp|Q10907|YWO4_CAEEL Probable G-protein coupled receptor AH9.4 1.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510432.1 7 15-37,58-80,108-125,138-160,180-202,239-261,276-293
F54E4.2 7 15-37,58-80,108-125,138-160,180-202,239-261,276-293
SNAP00000032268 2 28-50,70-92
GENEFINDER00000032275 4 15-37,112-134,138-160,180-202
Sequence
Target Sequence 
>C. ELEGANS:193364_AT
tgtgttcatctccactttgttaccagtctcctttattctcgcactggatctcttggtact
atgttttcgtccatctagacagcaaaacgatccattgctacagattgttttccatagact
agatgaagatacggagaagaggaaaatgataacaactcggaaattcatgctggtcacgct
gctcgccgtgagcttatccactccagatggtatccttcgagctatcaggccgtatatcga
cgggaacgttgtgttcattttgtttcaagtcttcaaaggatcttatttagcaaggttcac
attcaacgcgttttacctaacactgttcgttttcgaccggaacattttatccaaagtttc
atcttctcgtcacttatcggtctcgatgcgtcgtcttgaagaagagccggcaattgttcc
ccgtgaaagaagccgaacactttcctgtcaaagaccaccactagtgcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGTTCATCTCCACTTTGTTACCA 35 557 558 Antisense
TCGCACTGGATCTCTTGGTACTATG 5 601 596 Antisense
GGTACTATGTTTTCGTCCATCTAGA 163 503 612 Antisense
ATCCACTCCAGATGGTATCCTTCGA 327 37 753 Antisense
TATCCTTCGAGCTATCAGGCCGTAT 270 657 768 Antisense
GGTTCACATTCAACGCGTTTTACCT 317 503 851 Antisense
TCCAAAGTTTCATCTTCTCGTCACT 111 589 907 Antisense
TCTCGTCACTTATCGGTCTCGATGC 418 611 922 Antisense
GGTCTCGATGCGTCGTCTTGAAGAA 206 503 936 Antisense
GAAGAAGAGCCGGCAATTGTTCCCC 534 339 955 Antisense
GTCAAAGACCACCACTAGTGCACAA 277 463 1004 Antisense
Sequence Source Affymetrix Proprietary Database