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[193359_at] Zinc finger present in dystrophin, CBP/p300

Description T26H2.5 /REP_DB=WormBase Gene ID /WP=CE16491 /TR=O18138 /GB=CAB04847.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger present in dystrophin, CBP-p300
Cluster 6grp_total > 24      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 98.5
(3)
A 		35.7
(-3)
A 		44.7
(-2.1)
A 		75.5
(0.8)
A 		63
B 64.6
(1.8)
A 		80.1
(3)
A 		5.6
(-3)
A 		31.6
(-0.9)
A 		75
C 75.5
(3)
A 		7.7
(-3)
A 		18.2
(-2.1)
A 		40.7
(-0.1)
A 		68
avr 79.5
(3) 		41.2
(-1.1) 		22.8
(-3) 		49.3
(-0.2) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 53.4
(3)
A 		15.3
(-1.5)
A 		16.3
(-1.4)
A 		9.4
(-2.2)
A 		2.7
(-3)
A 		22
(-0.7)
A 		51
B 13.5
(-1.8)
A 		46.1
(3)
A 		27.6
(0.3)
A 		5.8
(-2.9)
A 		20.5
(-0.8)
A 		5.4
(-3)
A 		41
C 40.9
(1.6)
A 		42.4
(1.8)
A 		39.2
(1.4)
A 		51.4
(3)
A 		21
(-1.1)
A 		6.4
(-3)
A 		45
avr 35.9
(3) 		34.6
(2.7) 		27.7
(1) 		22.2
(-0.3) 		14.7
(-2.2) 		11.3
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 35.9
(3)
A 		7.8
(-3)
A 		11.7
(-2.2)
A 		11.1
(-2.3)
A 		28
B 20.6
(3)
A 		19.8
(2.8)
A 		1.3
(-3)
A 		6.7
(-1.3)
A 		19
C 25
(3)
A 		2.2
(-3)
A 		6.3
(-1.9)
A 		6.9
(-1.8)
A 		23
avr 27.2
(3) 		9.9
(-2) 		6.4
(-3) 		8.2
(-2.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.9
(3)
A 		5.4
(0)
A 		3.6
(-1.2)
A 		2.4
(-1.9)
A 		0.8
(-3)
A 		5.4
(0)
A 		9
B 4.7
(-1.6)
A 		15.3
(3)
A 		6.7
(-0.7)
A 		1.5
(-3)
A 		8.3
(-0)
A 		2
(-2.8)
A 		14
C 15.2
(3)
A 		12.9
(1.9)
A 		10
(0.6)
A 		10.3
(0.8)
A 		6.8
(-0.8)
A 		2.1
(-3)
A 		13
avr 9.9
(2) 		11.2
(3) 		6.8
(-0.3) 		4.7
(-1.9) 		5.3
(-1.4) 		3.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13100
Sequence Type Exemplar sequence
Representative Public ID T26H2.5 NCBI
Target Description T26H2.5 /REP_DB=WormBase Gene ID /WP=CE16491 /TR=O18138 /GB=CAB04847.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger present in dystrophin, CBP-p300
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075337 NCBI Caenorhabditis elegans T26H2.5 (T26H2.5) mRNA, complete cds. 11/11 None
SNAP00000014892 ENSEMBL cdna:SNAP chromosome:CEL140:V:19233355:19235583:1 11/11 None
GENEFINDER00000014898 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19233355:19234593:1 11/11 None
T26H2.5 ENSEMBL cdna:known chromosome:CEL140:V:19233355:19234593:1 gene:T26H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19233354-19234593(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger present in dystrophin, CBP/p300
Ensembl T26H2.5
Entrez Gene 188950 Entrez gene
SwissProt O18138 EMBL-EBI
WormBase CE16491 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04847 Hypothetical protein T26H2.5 [Caenorhabditis elegans] ref|NP_507738.1| T26H2.5 [Caenorhabditis elegans] 1.0E-105
blast CAB04847 Hypothetical protein T26H2.5 [Caenorhabditis elegans] ref|NP_507738.1| T26H2.5 [Caenorhabditis elegans] 4.0E-98
blast CAA19481 Hypothetical protein Y32B12A.1 [Caenorhabditis elegans] ref|NP_507173.1| Y32B12A.1 [Caenorhabditis elegans] 4.0E-25
blast AAC26954 Vegf (vascular endothelial growth factor) receptor family protein 2 [Caenorhabditis elegans] ref|NP_497158.2| VEGF (vascular endothelial growth factor) Receptor family member (ver-2) [Caenorhabditis elegans] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.9E-10
Sequence
Target Sequence 
>C. ELEGANS:193359_AT
tcaagctccatcataccactttatctttcttctaatacatctcactctgcgtcgagctac
acccgtacggtctatgtcactttccacaagacttttgagaagaaagttgtgtcaatggat
tttagtgagtctactgctttcgaggatatctctagacgtgccagaagcttgtttcccgga
tctgattggagaattttttcaggcaacccctaccactcgaacgttgaaattcatagctcc
agtgaaatctactcgtacatcaagcggaccaccatctgcggcttcgagtaccttgtcatt
aacctcgaaccgatcgttgagccccatcacacgaactccgagttttacgcgaaatgcgac
tcatgtggaactcaaatcgcaggacgccgctacaaatgcacaatgtgcgcggactttgac
atttgtgaacgttgtgaggcaaaatcggttcatctccagcatgcgatgcttcgtatcagc
acc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCTCCATCATACCACTTTATC 60 633 94 Antisense
CTAATACATCTCACTCTGCGTCGAG 457 227 125 Antisense
GAGCTACACCCGTACGGTCTATGTC 466 387 147 Antisense
GTGAGTCTACTGCTTTCGAGGATAT 211 483 218 Antisense
AGAAGCTTGTTTCCCGGATCTGATT 125 75 256 Antisense
TCTACTCGTACATCAAGCGGACCAC 107 615 341 Antisense
GGCTTCGAGTACCTTGTCATTAACC 203 537 373 Antisense
TAACCTCGAACCGATCGTTGAGCCC 35 639 393 Antisense
GTGGAACTCAAATCGCAGGACGCCG 226 485 458 Antisense
GGCAAAATCGGTTCATCTCCAGCAT 10 535 531 Antisense
GCATGCGATGCTTCGTATCAGCACC 575 309 552 Antisense
Sequence Source Affymetrix Proprietary Database