[Home] | [Total List]

[193358_at] 7TM receptor, srx family

Description T26H8.2 /REP_DB=WormBase Gene ID /WP=CE18969 /TR=Q9XUN0 /GB=CAB04860.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 33      4grp_total > 02      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 9.8
(-2.7)
A 		5.7
(-2.9)
A 		4.2
(-3)
A 		104.1
(3)
A 		100
B 20.9
(1.4)
A 		25.3
(3)
A 		8.7
(-3)
A 		22.4
(2)
A 		17
C 27.4
(-2.4)
A 		12.7
(-3)
A 		30.6
(-2.2)
A 		154.2
(3)
A 		142
avr 19.4
(-2.6) 		14.6
(-3) 		14.5
(-3) 		93.6
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 52.1
(3)
A 		30.7
(0.2)
A 		37.2
(1)
A 		6.6
(-3)
A 		8.7
(-2.7)
A 		10.7
(-2.5)
A 		46
B 23
(-0.3)
A 		18
(-1.1)
A 		45.6
(3)
A 		28.8
(0.5)
A 		21.3
(-0.6)
A 		4.8
(-3)
A 		41
C 7.5
(-0.3)
A 		11.9
(3)
A 		8.7
(0.6)
A 		5.5
(-1.8)
A 		3.9
(-3)
A 		6
(-1.4)
A 		8
avr 27.5
(2.2) 		20.2
(0.3) 		30.5
(3) 		13.6
(-1.4) 		11.3
(-1.9) 		7.2
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.6
(-1.9)
A 		1.2
(-3)
A 		1.1
(-3)
A 		15.2
(3)
A 		14
B 6.7
(3)
A 		6.3
(2.5)
A 		2
(-3)
A 		4.8
(0.6)
A 		5
C 9.1
(-1.5)
A 		3.6
(-3)
A 		10.7
(-1.1)
A 		26
(3)
A 		22
avr 6.5
(-1.6) 		3.7
(-3) 		4.6
(-2.5) 		15.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.6
(2.2)
A 		10.9
(3)
A 		8.1
(1.2)
A 		1.7
(-3)
A 		2.6
(-2.4)
A 		2.6
(-2.4)
A 		9
B 8
(1)
A 		6
(-0.3)
A 		11.1
(3)
A 		7.6
(0.7)
A 		8.6
(1.4)
A 		1.8
(-3)
A 		9
C 2.8
(1.1)
A 		3.6
(3)
A 		2.2
(-0.4)
A 		1.1
(-3)
A 		1.3
(-2.5)
A 		2
(-0.8)
A 		3
avr 6.8
(2.6) 		6.8
(2.6) 		7.1
(3) 		3.5
(-1.3) 		4.2
(-0.5) 		2.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14766
Sequence Type Exemplar sequence
Representative Public ID T26H8.2 NCBI
Target Description T26H8.2 /REP_DB=WormBase Gene ID /WP=CE18969 /TR=Q9XUN0 /GB=CAB04860.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074392
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074392 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-48) (srx-48) mRNA, complete cds. None
GENEFINDER00000028605 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15301776:15307639:-1 None
T26H8.2 ENSEMBL cdna:known chromosome:CEL140:V:15304957:15306311:-1 gene:T26H8.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15304956-15306199(-) 99.78 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-48
Ensembl T26H8.2
Entrez Gene 188961 Entrez gene
SwissProt Q9XUN0 EMBL-EBI
WormBase CE36327 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast CAB04860 Hypothetical protein T26H8.2 [Caenorhabditis elegans] ref|NP_506793.2| Serpentine Receptor, class X family member (srx-48) [Caenorhabditis elegans] 1.0E-163
blast CAA20963 Hypothetical protein Y102A5C.22 [Caenorhabditis elegans] ref|NP_507293.2| Serpentine Receptor, class X family member (srx-54) [Caenorhabditis elegans] 1.0E-100
blast CAB03338 Hypothetical protein T10H4.9 [Caenorhabditis elegans] ref|NP_506786.2| Serpentine Receptor, class X family member (srx-51) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506793.2 6 9-31,51-70,127-144,180-199,220-242,252-274
T26H8.2 6 9-31,51-70,127-144,180-199,220-242,252-274
GENEFINDER00000028605 12 45-64,79-101,122-144,164-186,241-258,294-313,334-356,366-388,401-423,799-821,834-851,856-878
Sequence
Target Sequence 
>C. ELEGANS:193358_AT
ttgtggctcccatcagctatgaatcaatattcaactcctcaaataccaaacaactaatta
ttatttcatgggctctcgctatttttccatcgttttatttttatgtgtatagtaagtatt
taaaactgccgaaatttccaacctatcaaaatcgcctatcgcgcgtcgctgattggtcaa
cgctttttgaaattcagataaatgactgcaaactattttataacgaagttttctctgctt
tctttttcacccgatccccatcctgttcgacgattgtctggtatgcggactatttgaagt
ttaactctattgtaattgcaatagttattattgatgtgatcactgtctccaaagttagaa
gttttaaaacaaaacaagcatgtctccaggcttttgtatttgtttgtgagctagtctgct
attttttgatagctccaaaagtaatcgaatatggaagatggttcgtattccttttgacaa
caattccatgggtcagcgtgcacatgctcgatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGGCTCCCATCAGCTATGAATC 302 709 308 Antisense
TCAACTCCTCAAATACCAAACAACT 386 631 338 Antisense
TTATTATTTCATGGGCTCTCGCTAT 185 679 365 Antisense
AACTGCCGAAATTTCCAACCTATCA 87 143 431 Antisense
AACCTATCAAAATCGCCTATCGCGC 474 145 447 Antisense
GTCGCTGATTGGTCAACGCTTTTTG 437 475 472 Antisense
CCCATCCTGTTCGACGATTGTCTGG 400 259 564 Antisense
GCATGTCTCCAGGCTTTTGTATTTG 344 311 685 Antisense
AGATGGTTCGTATTCCTTTTGACAA 251 67 763 Antisense
AACAATTCCATGGGTCAGCGTGCAC 50 135 786 Antisense
GTCAGCGTGCACATGCTCGATGGAA 402 465 799 Antisense
Sequence Source Affymetrix Proprietary Database