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[193355_at] 7 transmembrane receptor (rhodopsin family)

Description T09E8.4 /REP_DB=WormBase Gene ID /WP=CE13493 /TR=Q22362 /GB=CAB01517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 11      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 13.1
(-2.6)
A 		15.7
(-2.5)
A 		4.2
(-3)
A 		134.6
(3)
A 		130
B 35.5
(0.9)
A 		51.8
(2.9)
A 		4.7
(-3)
A 		52.6
(3)
A 		48
C 9.9
(-3)
A 		19.4
(-2.6)
A 		11.5
(-2.9)
A 		143.2
(3)
A 		133
avr 19.5
(-2.3) 		29
(-1.7) 		6.8
(-3) 		110.1
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.1
(3)
A 		8.1
(-1.5)
A 		10.8
(-0)
A 		13.2
(1.4)
A 		10.1
(-0.4)
A 		5.5
(-3)
A 		11
B 5.7
(-2.5)
A 		17.7
(3)
A 		10.7
(-0.2)
A 		8.1
(-1.4)
A 		11.6
(0.2)
A 		4.6
(-3)
A 		13
C 6.6
(-3)
A 		42.9
(3)
A 		9.3
(-2.5)
A 		17.3
(-1.2)
A 		6.5
(-3)
A 		8.7
(-2.6)
A 		36
avr 9.5
(-1.8) 		22.9
(3) 		10.3
(-1.6) 		12.9
(-0.6) 		9.4
(-1.9) 		6.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.8
(-1.8)
A 		3.4
(-2.3)
A 		1.1
(-3)
A 		19.7
(3)
A 		19
B 11.3
(2.2)
A 		12.8
(3)
A 		1.1
(-3)
A 		11.2
(2.2)
A 		12
C 3.3
(-3)
A 		5.6
(-2.3)
A 		4
(-2.8)
A 		24.1
(3)
A 		21
avr 6.5
(-1.4) 		7.3
(-1.1) 		2.1
(-3) 		18.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3
(2.1)
A 		2.9
(1.8)
A 		2.4
(0.3)
A 		3.3
(3)
A 		3
(2.1)
A 		1.3
(-3)
A 		2
B 2
(-2.6)
A 		5.9
(3)
A 		2.6
(-1.7)
A 		2.2
(-2.3)
A 		4.7
(1.3)
A 		1.7
(-3)
A 		4
C 2.5
(-2.8)
A 		13.1
(3)
A 		2.4
(-2.8)
A 		3.5
(-2.2)
A 		2.1
(-3)
A 		2.9
(-2.6)
A 		11
avr 2.5
(-2.4) 		7.3
(3) 		2.5
(-2.4) 		3
(-1.9) 		3.3
(-1.5) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13701
Sequence Type Exemplar sequence
Representative Public ID T09E8.4 NCBI
Target Description T09E8.4 /REP_DB=WormBase Gene ID /WP=CE13493 /TR=Q22362 /GB=CAB01517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073878
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073878 NCBI Caenorhabditis elegans T09E8.4 (T09E8.4) mRNA, complete cds. None
T09E8.4 ENSEMBL cdna:known chromosome:CEL140:V:13184171:13186828:-1 gene:T09E8.4 None
GENEFINDER00000032127 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13184171:13186828:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032125 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13184603-13186828(-) 95.78 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl T09E8.4
Entrez Gene 188327 Entrez gene
SwissProt Q22362 EMBL-EBI
WormBase CE28955 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01517 Hypothetical protein T09E8.4 [Caenorhabditis elegans] ref|NP_506279.1| T09E8.4 [Caenorhabditis elegans] 0.0
blast CAE64653 Hypothetical protein CBG09424 [Caenorhabditis briggsae] 1.0E-111
blast CAE64652 Hypothetical protein CBG09423 [Caenorhabditis briggsae] 1.0E-110
blast CAE64652 Hypothetical protein CBG09423 [Caenorhabditis briggsae] 1.0E-105
blast CAE64653 Hypothetical protein CBG09424 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 2.9E-60
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 2.9E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506279.1 7 5-27,47-69,145-167,187-206,219-241,276-298,319-341
T09E8.4 7 5-27,47-69,145-167,187-206,219-241,276-298,319-341
GENEFINDER00000032127 7 5-27,47-69,113-135,155-174,187-209,244-266,287-309
Sequence
Target Sequence 
>C. ELEGANS:193355_AT
ttccgccaactgactgccaaaatatttgattcgtttatcatatatgaatggttgtgctta
gtttggatacttcctgcaattatattattgattttggtatttaataattgcaaatataat
tttaaaaaggctccgagtaatttcgttttgaactgtcaaccatggggaagtatagttgat
cttccgccgcctagatggatccaaatattggaattggttgttcaatttggaattccattc
ttcatacttttcctgtacattgcagtgatcttcaaaatattcgcgatgaaaaaatcaact
ctgaataaaaatgagattcgagttttggttcaggcaattgttatttttgttttcttccag
gtatgtcaggttttaatccctcattatccaaattttccaggcatcctcgtcagtttttct
aatttgccaaacgattgcattcaacacggcgactgcatttgtaatcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGCCAACTGACTGCCAAAATAT 269 697 634 Antisense
GTGCTTAGTTTGGATACTTCCTGCA 670 477 687 Antisense
GAAGTATAGTTGATCTTCCGCCGCC 100 337 800 Antisense
TTCCGCCGCCTAGATGGATCCAAAT 298 695 815 Antisense
GAATTCCATTCTTCATACTTTTCCT 75 325 863 Antisense
TGTTTTCTTCCAGGTATGTCAGGTT 401 561 981 Antisense
GTCAGGTTTTAATCCCTCATTATCC 131 465 998 Antisense
ATCCAAATTTTCCAGGCATCCTCGT 316 39 1019 Antisense
GCATCCTCGTCAGTTTTTCTAATTT 547 307 1034 Antisense
AACGATTGCATTCAACACGGCGACT 439 143 1063 Antisense
CACGGCGACTGCATTTGTAATCAAG 391 197 1078 Antisense
Sequence Source Affymetrix Proprietary Database